Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0623 ATGGACATTGAGGTTATCGAATCTCATGATTCAACTTCACTCTCACCATGCACACCACCAACATCATCATTATTTCAGAAGAGGAAAGCAGGTAGAAAAAAGTTTAGAGAGACACGGCACCCGGTGTATAGGGGTGTACGGCAAAGAAACGGCAAGAAATGGGTGTGTGAAATAAGAGAACCAAAAACCAAATTAAAATCAAGGATTTGGGTTGGGACATACCCTACTCCTGAAATGGCAGCTAGGGCACATGACGTGGCAGTCTTGGCACTTAGTGGCACCTCAGCGAAGTTCAATTTCCCCGATTCAGTTCCCCTTCTCCCACTTGCAAAGTCACGTTCTGCATTACATATAAGAGAAGCAGCTTCTACTATACCAAAACCCAATGAGTCTGAAAGAATGTTCTTTGATGAGGAGGCAGTGTATAACATGCCAGCTTTGTTGGATAGCATGGCAGAGGGTTTGCTTATTACCCCGCCTTCTATGGAAACACCAACAGAATATTCGGACTACACCCTCCAATCGAAGAGATCAGTACTTGTACTTAAATCCACATACACTCAATAA 567 0.4356 MDIEVIESHDSTSLSPCTPPTSSLFQKRKAGRKKFRETRHPVYRGVRQRNGKKWVCEIREPKTKLKSRIWVGTYPTPEMAARAHDVAVLALSGTSAKFNFPDSVPLLPLAKSRSALHIREAASTIPKPNESERMFFDEEAVYNMPALLDSMAEGLLITPPSMETPTEYSDYTLQSKRSVLVLKSTYTQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0623 188 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Aed5g0623 188 Pfam AP2 domain 41 92 IPR001471 GO:0003700|GO:0006355
Aed5g0623 188 SMART rav1_2 42 107 IPR001471 GO:0003700|GO:0006355
Aed5g0623 188 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Aed5g0623 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 129 170 IPR045277 GO:0003700
Aed5g0623 188 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Aed5g0623 188 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Aed5g0623 188 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 10 125 - -
Aed5g0623 188 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 129 170 - -
Aed5g0623 188 ProSiteProfiles AP2/ERF domain profile. 42 101 IPR001471 GO:0003700|GO:0006355
Aed5g0623 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 125 IPR045277 GO:0003700
Aed5g0623 188 SUPERFAMILY DNA-binding domain 42 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0623 Aed-Chr5 4557767 4558894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0623 27 163 AP2-EREBP Transcription Factor Family AT4G25470 48.193 1.62e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g0623 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0623 - - gmx:100793751 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0623 5 4557767 4558894 Aed5g0623 5 4557767 4558894 ECH