Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0610 ATGGAAGCACCAATGGAGTTTTGGGGTAACTTCCTCTATTCTCTCTCTCTTTTCACTTCATTTCGTGTTGAGGTCAAGGTGGGGCAAACTTTGAAGGTTGATCCAACGGATCCTTTGAATGCATACGTACACATTTCTCAGGTTGCCCTCGGAGAGGCGAAAAAGGAGAAACCTAATGAGTCTGTGGTTCTTTACTTGAAAGTTGATGACCAGAAGATTGTCTTGGGAACCCTTTCTAGGGATGGCATCCCTCATCTGGCGTTGGATTTGGTTCTGGATTCTGAGTCTGAGCTCTCCCACACTTCGAAAAGTGCTAGTGTCTTTTTTTGTGGATACAAAGTTCTAACATGTTGTTTTATTTTGACAGATAGTGAAGAAGAGGATGAGGATCTTGCATTGGAGGGTCTAGAGAATGGTAGATTCTTCCTCTTGATGCGAAATACATTTTTAGATATGGAAGATGGTAGCGATAGTGATGATGAGAGTGATGAAGACGATGAAGAGACCCCTGTTAAGAAGGTGGATCAGGGCAAGAAGAGACCCAATGAGTCTGCAACAAAGACTCCTGTTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGATGGTAAGAAAAGTGTACATGTAGCAACTCCTTATCCTACGAAGAAGGGTGGAAAGACTCCCAATAGTGCAAAAGGCCAGAGTCCTAGTTCTGCTGGACTATCTTGTGCAAGTTGTAAAAAGGGTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA 792 0.4343 MEAPMEFWGNFLYSLSLFTSFRVEVKVGQTLKVDPTDPLNAYVHISQVALGEAKKEKPNESVVLYLKVDDQKIVLGTLSRDGIPHLALDLVLDSESELSHTSKSASVFFCGYKVLTCCFILTDSEEEDEDLALEGLENGRFFLLMRNTFLDMEDGSDSDDESDEDDEETPVKKVDQGKKRPNESATKTPVSAKKAKTATPEKTDGKKSVHVATPYPTKKGGKTPNSAKGQSPSSAGLSCASCKKGFTNEAGLQQHKKAKHGGQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0610 263 MobiDBLite consensus disorder prediction 219 241 - -
Aed5g0610 263 MobiDBLite consensus disorder prediction 153 241 - -
Aed5g0610 263 Pfam Nucleoplasmin-like domain 23 113 IPR041232 -
Aed5g0610 263 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 22 132 - -
Aed5g0610 263 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 125 259 - -
Aed5g0610 263 ProSitePatterns Zinc finger C2H2 type domain signature. 239 260 IPR013087 -
Aed5g0610 263 Gene3D Nucleoplasmin core domain 16 116 - -
Aed5g0610 263 MobiDBLite consensus disorder prediction 154 168 - -
Aed5g0610 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 263 IPR013087 -
Aed5g0610 263 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 22 132 - -
Aed5g0610 263 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 125 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0610 Aed-Chr5 4466607 4469699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0610 5 141 C2H2 Transcription Factor Family AT5G03740 43.066 1.69e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0610 - - gmx:100802220 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1055 1 10498368 10501175 Aed5g0610 5 4466607 4469699 PCT