LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0607	ATGGAGCGACAAGAGAATTATATCGAAGCTGATCAGTTTGTGACTCTAGGCTCCACCCCAGACGAGCAGCCACACACTCCTAGAGAAGACAAGCCTCACAACAATGATAACAATGGAGTTGGTTCCACCTTAGCCACACCAGATGTGACGGGACAGGTGATGAAAAGAGGGAGAGGGAGACCTCGGAAATATGATGTTGTTGGGAACACAGTATCTTCAACCGCGACAGCACGACCACCGGGATTTTCCGATCAAACTCACAAGAGAGGCAGGGGACGTCCTCGTGGTTCTGGGAAATTGCAGATTCTAGCTTCCATGGGCGGGTTTGTGGCAGAAACAGCTGGGGGAAACATCATACCTCACGTGCTGACTGTGAGACTTGGAGAGGATCTGGTCAGCACGATAATGTCATTTTTTGACAAAGGCACTCGTGCAGTTTGCATACTTTCTGCCACTGGTGCTGTTTCAGATGTGGCCATTCGCCAAAATGGCGCTTCTCATGCTATCATGAGACTTGAGGGTACCTTTGAGATATTGTCTTTATCTGGAGCCTGTACCTATGCTAGTAGCCCTACTGGTCCAGTTCGTAAAAGTGGCACATTGAGCGTTTCATTGGCTAGATCTGATGGAAGGGTTTATGGTGGTGTTCTTGAAAGCGCATTGGTAGCAGCTTGCCCTATTCAACTTGTTATGGCCTCTTTCAAGCAAAACATCAGTAGCCAAGTCAAGAGAAAACAGTTGTCTGCTGAATCTCCAGATCCCCTCCTTATGGCGAGCAATTCAGATTCAGAAAGGGAACAAGCGAAACATCCAAAGTTGACAGAAGGTGAGAAGAGTTGTTCGCCACCGCCACCAACAGCAGCAACAACTAATAACGGTGTAACAGAAAATGTGTTGTTTCCTGCAACATCCAATGGAGTGGCAGAAGATAGTGTTGTTATTCCTCCAGATCACCGTGTGAACTCTGCCTCTGTTGATGCTGTTGTTGATTTCGACAGCCAGGCCCCACAGCCCGCCTCAGACGATTCAGATCAAAGGACTTCTGCAGATGCGAATGCAAGTGTAACAGAGTTATGA	1077	0.4782	MERQENYIEADQFVTLGSTPDEQPHTPREDKPHNNDNNGVGSTLATPDVTGQVMKRGRGRPRKYDVVGNTVSSTATARPPGFSDQTHKRGRGRPRGSGKLQILASMGGFVAETAGGNIIPHVLTVRLGEDLVSTIMSFFDKGTRAVCILSATGAVSDVAIRQNGASHAIMRLEGTFEILSLSGACTYASSPTGPVRKSGTLSVSLARSDGRVYGGVLESALVAACPIQLVMASFKQNISSQVKRKQLSAESPDPLLMASNSDSEREQAKHPKLTEGEKSCSPPPPTAATTNNGVTENVLFPATSNGVAEDSVVIPPDHRVNSASVDAVVDFDSQAPQPASDDSDQRTSADANASVTEL	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0607	358	MobiDBLite	consensus disorder prediction	244	262	-	-
	Aed5g0607	358	Pfam	AT hook motif	88	98	IPR017956	GO:0003677
	Aed5g0607	358	Pfam	AT hook motif	55	64	IPR017956	GO:0003677
	Aed5g0607	358	SUPERFAMILY	AF0104/ALDC/Ptd012-like	120	242	-	-
	Aed5g0607	358	SMART	AT_hook_2	88	100	IPR017956	GO:0003677
	Aed5g0607	358	SMART	AT_hook_2	55	67	IPR017956	GO:0003677
	Aed5g0607	358	MobiDBLite	consensus disorder prediction	336	358	-	-
	Aed5g0607	358	ProSiteProfiles	PPC domain profile profile.	115	255	IPR005175	-
	Aed5g0607	358	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	5	328	IPR039605	GO:0003680
	Aed5g0607	358	PRINTS	AT-hook-like domain signature	55	65	IPR017956	GO:0003677
	Aed5g0607	358	PRINTS	AT-hook-like domain signature	86	97	IPR017956	GO:0003677
	Aed5g0607	358	MobiDBLite	consensus disorder prediction	67	81	-	-
	Aed5g0607	358	MobiDBLite	consensus disorder prediction	324	358	-	-
	Aed5g0607	358	MobiDBLite	consensus disorder prediction	1	96	-	-
	Aed5g0607	358	MobiDBLite	consensus disorder prediction	244	292	-	-
	Aed5g0607	358	Pfam	Plants and Prokaryotes Conserved (PCC) domain	120	235	IPR005175	-
	Aed5g0607	358	Gene3D	-	120	251	-	-
	Aed5g0607	358	CDD	DUF296	120	234	IPR005175	-
	Aed5g0607	358	PANTHER	DUF296 DOMAIN PROTEIN	5	328	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0607	Aed-Chr5	4430739	4433463	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0607	54	250	AT-hook Motif Nuclear Localized (AHL) Family	AT3G61310	41.919	2.71e-40	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0607	-		-	gsj:114378162	457.603