Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0606 ATGGAACAACCACCGGCTGCACGACCGAGGGGTCGACCGAGGAAACGGAGAAGAAAGGAGGAGGAGGAGCATGAGGCCGAGGCTAAAAGACAGGCCATGGCGACGCGTGCCGTAGCTTTGGTAGGGAGGTTCGTGCTCAAGGATTTTCCCGGAAATGGAGTTTTTCTCGGGAAAGTCGTGTTTTATGAGTGTGGATTGTACCGCGTGAGTTACGAGGATGGCGATTCTGAGGATCTGGACAGTGCAGAGGTCCGCGCCATCCTTATGAAAGATGAGTCTTTTGTTAAAGACTTGGCCCGGAGGAGGGCCAAGTTGGAGAAAATAGTAACGGAAAATAATGCAAAGGCCGAAGCTGTTAAGGAGAAAAATAGGAATAAGGAGGAATCGGCCGTTGAAGTCACTGAATCAGGAGTTGAGAACAATGTAGAAGAGAAGAATGATGATGATGATGAGAAAGAGGATGATGATTCTGGCAGTGACTCGGGCTTGGGGGAAAGTGAGCCTGGGGTTGGTGTGGAGTCACTGCCGCCTCTGCCGCCACCGCCCGAGTTGCCGGCGTCATCGGGGACTGTTGGTGTACCGGAGGAGTCTGTGTCACATTTATTTGCTGTATATGGATTCCTGAGATCGTTCAGTACCCGATTATTTCTTATGCCATTTACTCTGGACGAGTTTGTGGGGGCTGTGAATTGCCGTGTTCCAAACACACTGTTTGATGCCGTTCACCTTTCCTTGATGAAAGTGTTGCGGGGGAATCTGGAAGCCCTCTCATCAGAGGGCTCAGATATAGCTTCTAAATGCCTCAGGTGCAATGATTGGAGCTTGCTGGATTCATTGACTTGGCCAGTCTTTGTCATTCAGTATTTAGTAGTTAGTGGACACACAACTGCTCATGAATGGCGAGGATTTTACGAAGAGGTTTCCACTGATGAATATTATTTGTTGTCTGTGAGTAGGAAGTTGATGATATTGCAAATTCTCTGTGACAATGCTTTGGATTCTGAGGAGATTGTAACAGAAATGAACATTCGGAGAGAATCAGAGGTTGGGATGGATTACGATGGAGAAGATATTCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGCTACGTCAATACTTCAGCTTGTGATGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGCAAACCAACCTGGGAGCTCTATTTCATTTTCCAGAGATACAGAAAACACTGAAGATGGCGATGTTGATAGAAATGGAGATGAATGTCGTCTTTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCCGAGTGCAAAATTAATATGACGGGGCCAACCATTACAAAGGGAACATCACTTCGAGGGTCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACCTGCGAACACTTACTCGTTCTGAATATTGGGAGTGGTGAATTTGGTCTTAGATATTACAATACGAAGGACATTCCCTATGTTCTCCAAGTACTTTATGGATCCATGCAGCACAGACCATTATACCATGATATTTGCAGGGCAGTTCTGCAATATTGGAGTGTTCCTGAAAGTACTTTATTACTCCCTCCTTTGGGTGAAACCCCCCAAAGTCCTCCTCCTCAGTGCCCTCCTTCCAAGTCCTCTTTGGTAAATGGTCAATTTTGTAATTATGACCATGCAGATGATACGAGGTTGCCTATAAATCTTTCTTTGCAAACAAAAGAAAGCACCCAAGCAGCTTTTGAAAAGTGTGGACACAATGTAACCAACGATCTTGCATATATGGGTTTCTCCTATAAGCCTTTGACGTACAGTAATTACTATGCACATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGATCAGAGGGCCATGTGTCAGACAATCAGAGGAAAATGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCAAGTTTTGAAAAGAAGCTCGTGGAAGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCAAGCAAGAGAGGGTGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAAAGTGCTACAAAAGTGCTTGCTGGTGTTTCTCCTATAAGAAGTGGAGAGGGAATACTCCCTAGTATTGCAACCTACATTATTTACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAATGGCGTAAGCAAGTGGAACAGGCCACAACATATAGTGCTATCAAGCCACTTTTACTTAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGATTAAGTTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCTACTCTTGGAACAGCACAGAAACGTGCACCAAATGGGAGGCGTTACAAGAAGCGGTCAGCTAATGATGAAACTACAGCTGATGGTTGTCCTGAAAGCTTTGTGTGGTGGCGTGGTGGCAAGTTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGAAAAGCAGCGCGTCAAGGTGGTTCGAGAAAAATTTTGGGCATTTTTTATGCTGATAGCTCTGAAATCCCCAAAAGAAGTAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCCGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGTTTTCAGAAATGCAAATATTTGTGACAATAAACTTATGGAGGGGAAAATTTGTTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGCGTGATGAAAAATATTGTTCAAATAGAGCAAGATCCAGAAGGAAAGGATAAGTATTGGTTTTCTGAAACACGTATTCCTTTATATTTGGTAAAAGAGTATGAACAAGGTAATGGAAACATGCCATGTAATGAGGAGCACTTGAATACTGCATCTGAGTTGCTGCACAGAAGACGGCTGAAGGCTATTTGCAAGGATATATATTTTTACCTTACATGCAAGAGAGATAACATGGATGTGGTGTCGTGTTCTGTATGTCAGATGGGTGTTTTAATTCAGGATGCTCACAAGTGCTATGCATGCCAAGGTTATTGTCATGAGGGCTGTTCCACAAGATCAACAGTCCCTGCAAATGAAGTTGAGTACTTGACCACATGCAAGCAATGCTACCATGCCAGATTACTTGCTCAGAAAGAGAATAATAATGAATCGCCAACCAGTCCATTACTCCTACAAGGACGAGAGAATAACCCTGGGACATTTTTGAAGGGATCAAGGCCTAAATCTCATGATCAAGTACTGAAATCTTCCAGGACAAAGGTTAATAATGCTGACATGAAACAGGTTACTCCTGTGACAGCTTTGAAAGGAACAAAGGCTCAATGTTATGAACAAGAACCAACTTCTACCAGGACAATGGATAATAATCATTTTGACTTACCTCAAGTTGCTTCTGAGGCCACTTTGACAGGAAAACAACGCCCTCGCAAAAATAGTTCTTGGGGTATTATATGGCATAAGAAAATTAATGAAGATACAGACAATAATTTCTGGCTCAGAAACATACTTTTAAAGGGGGGTTCAAACATGCCACAATTAAAACCTGATTGTCACTTGTGTCGGAAGCCATATATGTCTGATCTGATGTATATTTGCTGTGAGGCATGCCAGCATTGGTATCATGCTGATGCTGTTGAACTTGAAGAATCCAAAATTTGTAATGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCTCAAGGTCTACAAAGAAAGAGCATTCTGGCCGAGCAGATTCCAATTCTGGAGCAATCTCTTATTATATGAGGGAATGTGAAGCTGCTACTCCTGTCTTTTCTGTAGAGGATGATTCTACTCGTGTCTTTCCTGTGGAGGGTGATCCTACTCCTGTCTTTCCTGTAGAGGACGATCCTCTTCTTTTTTCTCTTTCGAGTGTTGAGCTGATAACAGAACCTAAGATGGAAGGGGATGTTGAGTGGAACAGTGTCCCTGGTCCAGGGCTTCGGAAACTGCCAGTGAGAAGGAATGTTAAGCAAGAGGGGGATGATGATGTTTCTTTTGGAGATATGCCTTTGCATGCTGAAGACTTTGACAACAAGCTGCTGAATGACCCTGATAATGTAAATTATGATGATTACATGGAGGATTTTGAACCCAATACCTACTTTTCTCTAACGGAACTGCTGCAGCCAGAGGATGGTAGTCAGTTTGAGGGAGTTGATGTGTCTGGGGACTTGTCAGGTTATTTGGAAAATTCTAGTACCCTTATTCCTGAAGAATGTGGAGATGATGTTAAAGCAGAACCTGCATTTTCCTTTCAAGACACCACCGGCGGGGACTTGTCAGGATATTTGGAAAATTCTAGTGGCACCCTTATTCCTGAAGAAATTGGAGATGATGTTATAACAGAACATGCATTTTCCTTCCAAGACACCGGCTATAGTTGTATGAAGTGTTCACAAATGGAACCAGCCCCTGATCTGTTTTGTGAGGTTTGTGGGTTTTTTATTCACAGCGAATGTTCGCCTTGGGTTGAATTACCATCTAGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGATTGGTAA 4896 0.4326 MEQPPAARPRGRPRKRRRKEEEEHEAEAKRQAMATRAVALVGRFVLKDFPGNGVFLGKVVFYECGLYRVSYEDGDSEDLDSAEVRAILMKDESFVKDLARRRAKLEKIVTENNAKAEAVKEKNRNKEESAVEVTESGVENNVEEKNDDDDEKEDDDSGSDSGLGESEPGVGVESLPPLPPPPELPASSGTVGVPEESVSHLFAVYGFLRSFSTRLFLMPFTLDEFVGAVNCRVPNTLFDAVHLSLMKVLRGNLEALSSEGSDIASKCLRCNDWSLLDSLTWPVFVIQYLVVSGHTTAHEWRGFYEEVSTDEYYLLSVSRKLMILQILCDNALDSEEIVTEMNIRRESEVGMDYDGEDILPSEVGLRRVQPSYVNTSACDDKEATKFVSASNAANQPGSSISFSRDTENTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMTGPTITKGTSLRGSEIFGKDLYGQLFMGTCEHLLVLNIGSGEFGLRYYNTKDIPYVLQVLYGSMQHRPLYHDICRAVLQYWSVPESTLLLPPLGETPQSPPPQCPPSKSSLVNGQFCNYDHADDTRLPINLSLQTKESTQAAFEKCGHNVTNDLAYMGFSYKPLTYSNYYAHGDFAASAAAKFALLSSEESRSEGHVSDNQRKMASGNTYLQAKAFSLTASRFFWPSFEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAALSATKSATKVLAGVSPIRSGEGILPSIATYIIYMEECLRGLVVGPFLSASYRRQWRKQVEQATTYSAIKPLLLKLEENIRTIAFCGDWIKLMDDWLVEFSMVQSATSTLGTAQKRAPNGRRYKKRSANDETTADGCPESFVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKILGIFYADSSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASVFRNANICDNKLMEGKICYGIAFGSQKHLPSRVMKNIVQIEQDPEGKDKYWFSETRIPLYLVKEYEQGNGNMPCNEEHLNTASELLHRRRLKAICKDIYFYLTCKRDNMDVVSCSVCQMGVLIQDAHKCYACQGYCHEGCSTRSTVPANEVEYLTTCKQCYHARLLAQKENNNESPTSPLLLQGRENNPGTFLKGSRPKSHDQVLKSSRTKVNNADMKQVTPVTALKGTKAQCYEQEPTSTRTMDNNHFDLPQVASEATLTGKQRPRKNSSWGIIWHKKINEDTDNNFWLRNILLKGGSNMPQLKPDCHLCRKPYMSDLMYICCEACQHWYHADAVELEESKICNVLGFKCCKCRRIKSPVCPYSDLKPKRQEGKKSRSRSTKKEHSGRADSNSGAISYYMRECEAATPVFSVEDDSTRVFPVEGDPTPVFPVEDDPLLFSLSSVELITEPKMEGDVEWNSVPGPGLRKLPVRRNVKQEGDDDVSFGDMPLHAEDFDNKLLNDPDNVNYDDYMEDFEPNTYFSLTELLQPEDGSQFEGVDVSGDLSGYLENSSTLIPEECGDDVKAEPAFSFQDTTGGDLSGYLENSSGTLIPEEIGDDVITEHAFSFQDTGYSCMKCSQMEPAPDLFCEVCGFFIHSECSPWVELPSRLGSWRCGNCRDW 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0606 1631 MobiDBLite consensus disorder prediction 173 187 - -
Aed5g0606 1631 ProSiteProfiles Zinc finger PHD-type profile. 418 465 IPR019787 -
Aed5g0606 1631 SUPERFAMILY FYVE/PHD zinc finger 395 464 IPR011011 -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 1338 1363 - -
Aed5g0606 1631 Pfam PHD-finger 421 463 IPR019787 -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 16 30 - -
Aed5g0606 1631 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 342 IPR028942 -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 389 413 - -
Aed5g0606 1631 ProSitePatterns Zinc finger PHD-type signature. 421 462 IPR019786 -
Aed5g0606 1631 SMART testlast3 195 255 IPR018501 -
Aed5g0606 1631 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Aed5g0606 1631 SUPERFAMILY FYVE/PHD zinc finger 1277 1331 IPR011011 -
Aed5g0606 1631 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 6 557 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 1141 1164 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 114 141 - -
Aed5g0606 1631 Pfam DDT domain 196 250 IPR018501 -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 1 30 - -
Aed5g0606 1631 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 588 1191 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 389 405 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 838 861 - -
Aed5g0606 1631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1272 1331 IPR013083 -
Aed5g0606 1631 PANTHER PHD FINGER FAMILY PROTEIN 1546 1629 - -
Aed5g0606 1631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 471 IPR013083 -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 114 191 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 1338 1360 - -
Aed5g0606 1631 CDD PHD2_CHD_II 421 462 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 1141 1180 - -
Aed5g0606 1631 PANTHER PHD FINGER FAMILY PROTEIN 1193 1533 - -
Aed5g0606 1631 MobiDBLite consensus disorder prediction 142 161 - -
Aed5g0606 1631 PANTHER PHD FINGER FAMILY PROTEIN 588 1191 - -
Aed5g0606 1631 PANTHER PHD FINGER FAMILY PROTEIN 6 557 - -
Aed5g0606 1631 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1193 1533 - -
Aed5g0606 1631 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1546 1629 - -
Aed5g0606 1631 SMART PHD_3 1083 1131 IPR001965 -
Aed5g0606 1631 SMART PHD_3 1277 1325 IPR001965 -
Aed5g0606 1631 SMART PHD_3 1584 1629 IPR001965 -
Aed5g0606 1631 SMART PHD_3 420 463 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0606 Aed-Chr5 4411686 4420720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0606 38 1631 PHD Transcription Factor Family AT5G35210 43.192 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aed5g0606 DDT 6.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0606 - - gmx:100808261 2750.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0606 5 4411686 4420720 Aed5g0606 5 4411686 4420720 ECH
Aed1g1061 1 10542731 10550459 Aed5g0606 5 4411686 4420720 PCT