Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0599 ATGTCTCGTCGCGGCGGCTCTAAGCAGCAACCAGATTCACGCCGTCCGGCGCCACCTTCGGTGGCGCCGTCTCCCGCTGGTAGAGGCCGAGGTCGCGGCCGCGTCCGCGTGGAATACTCCGTTCCAGCGCCTTCTCCGGTCAATGCACCATTCACTCCTCCTCCTACTTCCACCATCGGCACTCCTCCTCCCATGGCGGTTGAATCCCTGACTTCCTCTGTTGAACAACAACTTACATTACAGACGACGGCGCCGGCGTCGTCGAAGGCGATGACGTTCCTCGCCCGGCCAGGGTTCGGTACAGTGGGGATGAAAATCAAAGTGCGCGCCAATCATTTCATGGTTAAGGCCGCTGAAAACGATCTGTTCCACTACGATGTCTCTATCAATCCTGAGATACCTTCTAAGAAGGTTTCCAGAGATGTTATTAGTTCGCTTGTCGAAATGCACCGTGAAAAGGTGCTCGGAAATCGCATACCGGCCTACGATGGGCGAAAGAGTCTTTTCACCGCTGGTCCCTTACCCTTCGATTCAAAGGAATTTGTGATCTCTCTAAAGGACGATGAGGAACCAGGCTCCTCTTCTTCCGCTCCTGCCAGGTGTGTGTTATTTTTTGTTAAGCGTGTTAATATTATTTTCGCTGTCGTCATTATTAGTCATATTTATTTTTACTATTACTATTACTATTATTATTATTATTATTATTATTATTTCTCTTGGAACAGGAAAAAACGTGAACGACAGTTTAAGGTCACCATCCGCCTTGTATCCAGGACTGACCTTCACCATCTCGGTCAGTTTCTCGCGCGCCGTCAGCCGGATTGTCCTTATGAAACTATTCAGGCTCTTGATGTTGTTCTGCGTGCAACACCGTCTAGAAGGTTCGATGTTGTGGGAAGATCGTTTTTCTCGCCTGTTTTGGGCCATCCTGGATCGCTTGGTTGCGGGACAGAGTATTGGAGGGGCTATTACCAGAGCCTTCGCCCAACTCAGATGGGCCTGTCTCTTAATATCGATGTGTCAGCGAGGGCATTTTATGAGCCAATTGAAGTGCTTGAATTCATTGATAAGCATTTTAGGTTCAATTTCAAAAGGCCTTTGACCGATCAAGATCGAATCAAGCTTAAAAAAGTTTTCAGAGGCATCAAGGTAGAAGTTTCTCATGGAGAGAATCTCAGACGATACAAGATCACTGGAGTCACAAAACAACCACTCAGAGAGTTATTGTTTACTTGTGATGACAACACAAAAAGCTCAGTTGTTAAATATTTTCATGAGAAATACAATATTGTGTTGAAGTATACGCTACTTCCTGCTCTTCAAGCTGGTAGTGACTCTAAACCAATTTATTTGCCAATGGAGCTGTGTAAAATTGTGGCTGGACAGAGATATACCAAGAGATTGAATGAGGAGCAAGTGACTAATCTTTTAAAGGCAACTTGTCAGCGTCCTCATGAGAGAGAAAACTCTATCAGACAGGTTGTGGTGCAAAGCAAATTCGGCGAAGACCAATTTGCACGTCACTTTGGAATTCAAGTGAAGGAGGATCCAGCAGTGCTTGATGCTCGGGTTTTGCCACCCCCTATGCTAAAATATCATGAGACAAGTAGACAATCACGAGTTGAACCCAGGATGGGTCAATGGAATATGATTGATAAGAAAATGGTTAATGGTGGTGCTGTGCAATATTGGACTTGCCTCAACTTTTCTTCAAGAACAGGCATAGAGTTGGCATCCAAGTTTTGTCATGCGTTGGCCAAAATGTGTAATGACAAGGGCATGCGATTTGATACAGAGCCTTTACTGCCTGTAACATGTGTTCAAAGTAATCAAATAGAGAGTGCTCTTGTAAATGTTCATAAGCAGTCGATTGCAAGACTAGCTAACCTGGGGAAGGAAGGAAGACTCCAATTGTTGATCATAATTTTGCCTGATTTCAAGGGGTCTTACTCGAAAATTAAGCGGATATGTGAAACTGAGCTAGGAATAGTATCCCAGTGTTGTCAGCCGAGAAATGTTGTCAACATGAAGGGACAATATCTTGAAAATGTGGCCCTTAAAATAAATGTCAAGGTTGAATTTATCCCATAA 2091 0.4472 MSRRGGSKQQPDSRRPAPPSVAPSPAGRGRGRGRVRVEYSVPAPSPVNAPFTPPPTSTIGTPPPMAVESLTSSVEQQLTLQTTAPASSKAMTFLARPGFGTVGMKIKVRANHFMVKAAENDLFHYDVSINPEIPSKKVSRDVISSLVEMHREKVLGNRIPAYDGRKSLFTAGPLPFDSKEFVISLKDDEEPGSSSSAPARCVLFFVKRVNIIFAVVIISHIYFYYYYYYYYYYYYYYFSWNRKKRERQFKVTIRLVSRTDLHHLGQFLARRQPDCPYETIQALDVVLRATPSRRFDVVGRSFFSPVLGHPGSLGCGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEPIEVLEFIDKHFRFNFKRPLTDQDRIKLKKVFRGIKVEVSHGENLRRYKITGVTKQPLRELLFTCDDNTKSSVVKYFHEKYNIVLKYTLLPALQAGSDSKPIYLPMELCKIVAGQRYTKRLNEEQVTNLLKATCQRPHERENSIRQVVVQSKFGEDQFARHFGIQVKEDPAVLDARVLPPPMLKYHETSRQSRVEPRMGQWNMIDKKMVNGGAVQYWTCLNFSSRTGIELASKFCHALAKMCNDKGMRFDTEPLLPVTCVQSNQIESALVNVHKQSIARLANLGKEGRLQLLIIILPDFKGSYSKIKRICETELGIVSQCCQPRNVVNMKGQYLENVALKINVKVEFIP 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0599 696 MobiDBLite consensus disorder prediction 46 61 - -
Aed5g0599 696 SMART PAZ_2_a_3 353 485 IPR003100 GO:0005515
Aed5g0599 696 Pfam Piwi domain 640 692 IPR003165 GO:0003676
Aed5g0599 696 ProSiteProfiles PAZ domain profile. 349 460 IPR003100 GO:0005515
Aed5g0599 696 Pfam Mid domain of argonaute 543 621 IPR032473 -
Aed5g0599 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 75 211 - -
Aed5g0599 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 241 692 - -
Aed5g0599 696 SUPERFAMILY Ribonuclease H-like 520 696 IPR012337 -
Aed5g0599 696 Gene3D - 524 694 - -
Aed5g0599 696 Pfam Argonaute linker 2 domain 486 532 IPR032472 -
Aed5g0599 696 ProSiteProfiles Piwi domain profile. 638 696 IPR003165 GO:0003676
Aed5g0599 696 Pfam PAZ domain 371 477 IPR003100 GO:0005515
Aed5g0599 696 SMART DUF1785_2 296 348 IPR014811 -
Aed5g0599 696 Pfam N-terminal domain of argonaute 105 194 IPR032474 -
Aed5g0599 696 Pfam Argonaute linker 1 domain 298 347 IPR014811 -
Aed5g0599 696 SUPERFAMILY PAZ domain 344 495 IPR036085 GO:0005515
Aed5g0599 696 PANTHER PROTEIN ARGONAUTE 10 75 211 - -
Aed5g0599 696 PANTHER PROTEIN ARGONAUTE 10 241 692 - -
Aed5g0599 696 MobiDBLite consensus disorder prediction 1 61 - -
Aed5g0599 696 CDD PAZ_argonaute_like 348 459 - -
Aed5g0599 696 Gene3D paz domain 343 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0599 Aed-Chr5 4370906 4377385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0599 43 692 Eukaryotic Initiation Factors Gene Family AT1G48410 47.289 0.0 589