Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0592 ATGGAATTCTGGAACCGCAGACTGCTCCTACAGAACGAGGACGTTAACGTTCCAGTCTCCATGCCGCCACTCCACGCCGCTAACAACACACAATCTTCAGCTTTCGAATTCCAGAGCCCTCTGCAAGTATCGGTTCGTCCCGTGTTCTCGTCGAGCGCGGCCTACGTGTTCCTCATCCTCTTCACTACCTTCTTCTTCATCGGCTTCGTCTTCCTCTACTTCCGCCAATTCCACTCCTCCGACACCGCCACAGGCTCCTTCCACCGCCGCATCCGTGGGGAGGACGCCGCCTCCGCGAAGAAGTCCCTGCCGTTGGTACCGCACCGCAGCGACACGGCGAAGCAGGAGGAGTGCGCGATATGCCTGGAGGAGTTTGGAGAGGGAGACGCGGTGAAGATGATTCCGTACTGCAAGCACGTGTTCCATCCGCAGTGCATTGACACGTGGCTCGACAAGCATGTGACGTGCCCCGTGTGCCGGTGCACTGAGCTCTGTGGAGAGGTGGGGTCGTTGTCAGTTAGAAGACAACAAGGAGAAGAACAAGAAGAAATGGTTGTTCTAAATTTGGATTAA 573 0.562 MEFWNRRLLLQNEDVNVPVSMPPLHAANNTQSSAFEFQSPLQVSVRPVFSSSAAYVFLILFTTFFFIGFVFLYFRQFHSSDTATGSFHRRIRGEDAASAKKSLPLVPHRSDTAKQEECAICLEEFGEGDAVKMIPYCKHVFHPQCIDTWLDKHVTCPVCRCTELCGEVGSLSVRRQQGEEQEEMVVLNLD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0592 190 SMART ring_2 118 159 IPR001841 -
Aed5g0592 190 PANTHER RING-H2 FINGER PROTEIN ATL57 39 179 - -
Aed5g0592 190 SUPERFAMILY RING/U-box 109 162 - -
Aed5g0592 190 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Aed5g0592 190 PANTHER RING FINGER DOMAIN-CONTAINING 39 179 - -
Aed5g0592 190 Pfam Ring finger domain 117 160 IPR001841 -
Aed5g0592 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 163 IPR013083 -
Aed5g0592 190 CDD RING-H2_PA-TM-RING 117 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0592 Aed-Chr5 4312098 4312670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0592 49 164 C3H Transcription Factor Family AT2G27940 38.462 6.80e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0592 - - gmx:102668652 236.113