Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0590 ATGGATGAGCAGTTATCTATACATACACATCTGACGGAGTGTCACTCCATGAGTTGTCTATCTCTGCATCGAAAGGTCGTAGGTTTTCTACCGATAATAATGATGACCTTTATTTGCAGTATATGTCGTGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAACTTTTTTTCACACAGATTGTGTACCCCTTCCATGTATTCCAAGTGGTAAATGGTATTGTAAATATTGCCAGAATGTGTTCCAGAAAGACAAATATGTCGAGCAAAATGAAAATGTTGTGACAGCTGGAAGGATTGAAGGAATTGATCCTATTGAACAAATAAACCAAAGATGCATTCGTGTTGTCAAAGAGTTTGAACTTGGTGGATGTACATTGTGTAGGGGGCAAGATTTCAGCAAAAGCTTTGGTCCTTGGACAGTAATTATTTGTGATCAGGTGTTGCTTCATGAATATCATGTTGGGTGTTTGAAGGATAATAAAGTGCAGAACTTAGAGGGATTACCTGAAGGGAATAGGTTCTGTTGTTTAGATTATGATCAAATTCATACTGCTTTGGAGAATTTGGTGGCTCGTGGAGAAATGAATCTTCCAGATTTCCTCTTAAGTTTGATTAAAAAGAAATATGTGGAAAGAGGTGTAGAAATTGGTGCTGATCTTGATATAAAATGGAGGGTTCTAAATTGGAAATTGGACGAATCAGAGGATACTGGGAAATTGCTTTCAAAAGTTGTTGCTATTTTCCATGATCGATTTGGTCCAATAGTTCATTCTGGCATTGATTATATCCCAACAATGCTTTTTGGAAGGAACATTAAGGGTCAAGATTTTAGCGGAATGTACTGTGCACTGCTCACCGTTAATCAAGAGATTGTATCTGCTGGAGTATTCCGTGTATTTGGGCTAGAATTGGCAGAGCTTCCCTTGGTGGCAACTATTATCGGTTGTCAAGGACAGGGTTACTTCCAATCCTTGTTTTCTTGTATTGAGGGTTTTCTTAGATCATTAAAAGTCAAAAACTTTGTCCTACCAGCTGCTGATGAAGCTGAATCATTATGGACCAATAAATTTGGGTTTACAAGGCTAAACCAAGATGAGATCAACAATTATTGGAGAGATTACTACATGATGATATTTCAAGGGAACTCCTTACTACATAAGCCCGTTCCTGTACTCTGA 1185 0.3823 MDEQLSIHTHLTECHSMSCLSLHRKVVGFLPIIMMTFICSICRDGGDLLCCDGCPRTFFHTDCVPLPCIPSGKWYCKYCQNVFQKDKYVEQNENVVTAGRIEGIDPIEQINQRCIRVVKEFELGGCTLCRGQDFSKSFGPWTVIICDQVLLHEYHVGCLKDNKVQNLEGLPEGNRFCCLDYDQIHTALENLVARGEMNLPDFLLSLIKKKYVERGVEIGADLDIKWRVLNWKLDESEDTGKLLSKVVAIFHDRFGPIVHSGIDYIPTMLFGRNIKGQDFSGMYCALLTVNQEIVSAGVFRVFGLELAELPLVATIIGCQGQGYFQSLFSCIEGFLRSLKVKNFVLPAADEAESLWTNKFGFTRLNQDEINNYWRDYYMMIFQGNSLLHKPVPVL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0590 394 ProSitePatterns Zinc finger PHD-type signature. 39 79 IPR019786 -
Aed5g0590 394 ProSiteProfiles Zinc finger PHD-type profile. 36 82 IPR019787 -
Aed5g0590 394 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 251 380 IPR016181 -
Aed5g0590 394 PANTHER AUTOIMMUNE REGULATOR 38 392 - -
Aed5g0590 394 SUPERFAMILY FYVE/PHD zinc finger 34 82 IPR011011 -
Aed5g0590 394 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 38 392 - -
Aed5g0590 394 Gene3D - 222 389 - -
Aed5g0590 394 SMART PHD_3 38 80 IPR001965 -
Aed5g0590 394 CDD PHD1_AIRE 39 79 - -
Aed5g0590 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 98 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0590 Aed-Chr5 4288475 4291455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0590 38 391 PHD Transcription Factor Family AT2G36720 50.000 1.66e-113 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0590 - - pvu:PHAVU_011G087000g 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0590 5 4288475 4291455 Aed5g0590 5 4288475 4291455 ECH
Aed1g1078 1 10672014 10679327 Aed5g0590 5 4288475 4291455 PCT