Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0586 ATGATGCCGCCACCAAAGGCCACAATATCTACCTCCACAAATGATGATTTTCAAGAACTGCACATGTTTTCTCCTCCTGTGATTAATGAATATTTGGTTGAAGCAAGCTCTTCCTCATCAGCTGCTTCACACTCTTCTAACTCTCTCATATTCTATCTCTCACTTCTCAAGGAAAAGCTGAGTCAACTGCAGAACCTAGTCGGTGTTCTTGTCTCCCCTCTACCCGAGTCAACAACAACAACTCCCATGGCAATCTCCACCATCAACAACACAATCCAAGAAATCATAGTTGCAGCCACTTCAATGAGATTCACCTGCCAACAAATGACTCAAGCTGGTTCCTCTTCAGGTACTATTAACGAATTGCACCAGCAACAAATTGATCAATCAAACTTTGTTAACAACAATAGGGGTGTGCCTATTAACATCAACACAGTCTCAGATATTAATAGAGGGCAAAGTAATTTCTTATCTAGTATTGAGGGTGAGACATTGGATTGGTTTGCTGAAAGTTACAACAATAGCAATAATGGTAATTGTAGTAACCTTAAGGATGATGATGAAGCTGCAGCAGGCAACAACAACAACATCATGGGAAGGATTGAGAGTGACATAGTTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTCAAGCGTGACGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAGTGCAGCGTTGAGCAACCCAATGAAAAACAATAAAGAGAGTAATAGTAATAATAATTTGTTGCTATCAGGTGAAGGAAGTGGCAGTAGCAGCAAGAGATACTCGTGCCCTCAACAAGGGTGTAGGTGGAACCAAAAGCATGCAAAGTTTCAGCCTTTGAAGTCAATGATTTGTGCGAAGAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTCTCGGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGTTCGTGTGGCACCACGTTTTCTAGGAAGGACAAGCTTATGGGACATGTTGCTTTGTTCCTGGGGCACTCCCCAGTTAATATTCATGGCTTCTCCACGTCATCACACTCGGGAAAATCACAAGAACAATGGACATTGTTGTTGCAACAGAATATTAATGCTGCTGGTTCAAGATGA 1221 0.4308 MMPPPKATISTSTNDDFQELHMFSPPVINEYLVEASSSSSAASHSSNSLIFYLSLLKEKLSQLQNLVGVLVSPLPESTTTTPMAISTINNTIQEIIVAATSMRFTCQQMTQAGSSSGTINELHQQQIDQSNFVNNNRGVPININTVSDINRGQSNFLSSIEGETLDWFAESYNNSNNGNCSNLKDDDEAAAGNNNNIMGRIESDIVELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPMKNNKESNSNNNLLLSGEGSGSSSKRYSCPQQGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFLGHSPVNIHGFSTSSHSGKSQEQWTLLLQQNINAAGSR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0586 406 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Aed5g0586 406 Gene3D Classic Zinc Finger 214 270 - -
Aed5g0586 406 SMART c2h2final6 219 241 IPR013087 -
Aed5g0586 406 SMART c2h2final6 319 341 IPR013087 -
Aed5g0586 406 SMART c2h2final6 281 314 IPR013087 -
Aed5g0586 406 Gene3D Classic Zinc Finger 317 367 - -
Aed5g0586 406 MobiDBLite consensus disorder prediction 250 273 - -
Aed5g0586 406 Pfam Zinc finger, C2H2 type 219 241 IPR013087 -
Aed5g0586 406 MobiDBLite consensus disorder prediction 249 273 - -
Aed5g0586 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Aed5g0586 406 PANTHER OS08G0562300 PROTEIN 16 382 - -
Aed5g0586 406 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 16 382 IPR044300 GO:0010044|GO:0010447
Aed5g0586 406 SUPERFAMILY beta-beta-alpha zinc fingers 219 340 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0586 Aed-Chr5 4269437 4270657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0586 46 380 C2H2 Transcription Factor Family AT5G22890 49.573 1.70e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0586 zf-C2H2 8.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0586 - - gmx:100802399 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1082 1 10693853 10695028 Aed5g0586 5 4269437 4270657 PCT