Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0584 ATGGAGATCATGGAAGGGTTGGATTCTAATTATTCTTCTACCCACAACAACGTAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTGCGGTGTCGTGGCTGCTGCTGTAACCACCACCGTCGTCACTTCTAGCACTTCAAGTGCTAATTCGGGTGCCTCGTCCACCACTACCTACGAGAGTGAAGAGGAAGACATGGCGAATTGCTTGATTCTCTTGGCCCAAGGAGACAAGCAGCAACAAGTTGAAGATCATGATGGTGTCAGGACAGAAAAGAGTAACAACAACAGCAACAACAACACTAGCACTGCAGCAGCAACAACCGCTGTTAATAATAACACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCATAAGAAGCCCAAACTCGTGTCTGAAGAGAAAAAACAACCGTCAATGCCACCGCCAACGCCACAGTCTCAATTGATGCAACACATGATTATTACCAATTATGATCGGTTTGTGAAGGGTAACGTTAAAAGTGGTCCTCCTCCTCCTCCTCCTCCTCCTCAAATTTCCCTTCAATTGGGTCATGGCAACAACAAGGGTAAGATTCACGAGTGTTCCATTTGTGGCTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACACCAACAACACAATCTGTAACACCGTAACCGCCACTGCTCCACCAAGGAATATATTGCAATTGGATCTTAACCTCCCGGCGCCAGAAGACGATCTCCGAGAGGCTAAGTTCCAATTTACAGCAACACAGGTGCTGGTTGGTACTCCGGCTTTGGTGGATTGTCATTATTAG 894 0.472 MEIMEGLDSNYSSTHNNVAKGKRTKRMRLLSPCGVVAAAVTTTVVTSSTSSANSGASSTTTYESEEEDMANCLILLAQGDKQQQVEDHDGVRTEKSNNNSNNNTSTAAATTAVNNNTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLVSEEKKQPSMPPPTPQSQLMQHMIITNYDRFVKGNVKSGPPPPPPPPQISLQLGHGNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNTNNTICNTVTATAPPRNILQLDLNLPAPEDDLREAKFQFTATQVLVGTPALVDCHY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0584 297 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 4 297 - -
Aed5g0584 297 SMART c2h2final6 124 146 IPR013087 -
Aed5g0584 297 SMART c2h2final6 214 236 IPR013087 -
Aed5g0584 297 Gene3D Classic Zinc Finger 200 253 - -
Aed5g0584 297 Gene3D Classic Zinc Finger 97 173 - -
Aed5g0584 297 Pfam C2H2-type zinc finger 214 238 - -
Aed5g0584 297 Pfam C2H2-type zinc finger 124 149 - -
Aed5g0584 297 SUPERFAMILY beta-beta-alpha zinc fingers 123 236 IPR036236 -
Aed5g0584 297 MobiDBLite consensus disorder prediction 1 24 - -
Aed5g0584 297 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Aed5g0584 297 MobiDBLite consensus disorder prediction 95 109 - -
Aed5g0584 297 MobiDBLite consensus disorder prediction 140 167 - -
Aed5g0584 297 PANTHER ZINC FINGER PROTEIN ZAT5 4 297 - -
Aed5g0584 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Aed5g0584 297 MobiDBLite consensus disorder prediction 81 109 - -
Aed5g0584 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Aed5g0584 297 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0584 Aed-Chr5 4259369 4260262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0584 3 297 C2H2 Transcription Factor Family AT2G28200 40.426 2.25e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0584 zf-C2H2_6 2e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1083 1 10699725 10700672 Aed5g0584 5 4259369 4260262 PCT