Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0581 ATGGAACCTGAGATTCAGAATTTTGGGTGCATGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGTTGTGATGAGGTTTTTGACTGCAGGCATTGCCATAATGAATCTAAGAACTCTGAGGAGGTTGATGCTGTGGGTCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATCTGCTCCTTATGTGATATAGAGCAAGATGTTCAACAGTACTGTATGAACTGTGGAATATGCATGGGCAAGTACTTTTGTGCTATATGCAAATTCTTCGACGATGATATTTCAAAGAATCAATACCACTGTGATGAATGTGGCATTTGCAGAACTGGAGGCAAGGATAACTTTTTTCACTGCAAGAAATGTGGTGGGTATATTGTTCCAAATGCTTTGTTTAGATGTTGCTACTCGAAGGTAATGGAGAAGGGGCATCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTGTTTGACACAGTAAGAGAAATCAGTGTCTTACCTTGCGCGCATACTATACATTTAGACTGTGTTAAAGAAATGGAAAATCATCAGAGGTACTCATGTCCGGTTTGCTCAAAATCCATCTGTGACATGTCAAGTGTGTGGGAAAAGCTTGATGAATTGGTTGCCTCAACTCCAATGCCTGAAACCTACACAAACAAGATGGTGTGGATACTTTGCAATGATTGTGGAGTAAACTCTCATGTACAATTCCATGTTGTGGCCCATAAGTGCTTGAGTTGCAACTCATACAACACAAGACAGATACAAGGAGTACCTGCTACATCAAGCTCTTCTAGGGTGACTAAAATGGTGAGATGA 843 0.4128 MEPEIQNFGCMHYRRRCKIRAPCCDEVFDCRHCHNESKNSEEVDAVGRHDVPRHEIKKVICSLCDIEQDVQQYCMNCGICMGKYFCAICKFFDDDISKNQYHCDECGICRTGGKDNFFHCKKCGGYIVPNALFRCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMENHQRYSCPVCSKSICDMSSVWEKLDELVASTPMPETYTNKMVWILCNDCGVNSHVQFHVVAHKCLSCNSYNTRQIQGVPATSSSSRVTKMVR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0581 280 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
Aed5g0581 280 ProSiteProfiles Zinc finger CTCHY-type profile. 81 155 IPR017921 -
Aed5g0581 280 Gene3D - 227 268 - -
Aed5g0581 280 Pfam RING-type zinc-finger 156 196 IPR027370 -
Aed5g0581 280 SUPERFAMILY CHY zinc finger-like 7 80 IPR037274 GO:0008270
Aed5g0581 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 218 IPR013083 -
Aed5g0581 280 Pfam Zinc-ribbon 203 261 IPR039512 -
Aed5g0581 280 ProSiteProfiles Zinc finger CHY-type profile. 3 79 IPR008913 GO:0008270
Aed5g0581 280 SUPERFAMILY Zinc hairpin stack 82 149 IPR037275 -
Aed5g0581 280 SMART ring_2 156 198 IPR001841 -
Aed5g0581 280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 4 278 - -
Aed5g0581 280 SUPERFAMILY RING/U-box 155 204 - -
Aed5g0581 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 4 278 - -
Aed5g0581 280 Pfam CHY zinc finger 10 91 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0581 Aed-Chr5 4237566 4241154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0581 2 273 C2H2 Transcription Factor Family AT3G18290 39.146 1.85e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0581 K10144 - gmx:100812709 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0581 5 4237566 4241154 Aed5g0581 5 4237566 4241154 ECH