Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0579 ATGCTCGCATTGCATTTCCGACCCTGCTTTCCGATTAGGGTTTCCTCTCTCTTCTCTTTCCCTTTCCCTTCCTCTCTCTCCTCCGTCCCTCTCCGCGCAATGTCGAAGAAGCCACCCTCCGCCTTCGACGCCCTCATGCTCGGCGCACGCGCCGCCGCCGATAGGAAAAAATCTCAATCCAAATCCAAACCCCAACCATCATCCTCATCTCTCAAGAAACGAAAAATCCCACCCTCCTCTTGCACGCTAAACCCTAACAACCTCAAAGCCCCCAAACAACCCCCTTCCCCACCCAAAATCGCTGAACCGCAAGAACCCGACGTCAAACCGGAAGAACCAGACGTCAAACCGGAAGAACCAGACGTCAAACCGGAAGAACCCGCCGTTAAACCGGAAGAACTCGCCGTTAAGCCGCAAGAACCCGCCGTTGAGACGGAACCGCGGAAGGTCCGCCGCGTGTCAACTTCTTCTTCTTCTGCGTCGAAGGAGAAGACCGCGGAGCTGAAGGAGCAAGTTGCGCAGCTGATGAAGAAACCCTCCGATTTCGATCCCTCTTCGATAACCGCGTGCGAGAAGGGCCAGCCGCTGCCGTTCCTCTTCCTCTGCTTGGCCTTCGACATGATTTCTAAAGAAAGCGGAAGGATCGTCATCACTGACATTGTTTGCAATCTTCTGAGGACTGTCATGCACGCCACGCCGGAGGATCTTCTCCCCGTTGTTTACCTCTCCACTAACCGCATTGCCCCGGCGCACGCCGGGGTGGAATTGGGAATTGGCGAGTCTTCCATTACCAAGGCGCTTGCTGAGGCCTACGGAAGGACCGAGGCGCTGATCAAGGCTCAGTATCAGACTCGGTATCAGAAAAAAGGGGATTTAGGCTTGGTTGCTAAAGAGAGCCGTATGTCTCAGTCTATGATGTGGAAGCCTGAGGCATTGACTATTAGGAAGGTTTTCAACACTTTGCACCGTATTGCTAAGGAATCTGGAAAAGATAGTCAAGAGAAGAAAAAGAACCATATTAAGGCACTTCTTGTCGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGCTATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAGGAACACTCTAAACCGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTCGAAGATTGTTAAAGAAATCCATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTGTATGGATGCTTCCAAAGAATTGTACTTTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACCTGGCGAATGGCTCAGTTGAGATTTACAGTAGAAATGCAGAACGGAACACTGAGAAGTATCCTGATATTGTTGCTTCCGTTTCAAGGTTAAAGAAACCAACGGTATCATCGTTTATTCTTGATTGTGAAATTGTTGCATATAAACGTAAAACACATGAGATCCAATCTTTCCAGGTGCTTAGTACTCGGGCTCGCAAGAATGTAGCAATAAAAGATATATCGGTTGATGTTTGCATATATGCTTTTGATTTGTTGTATGTCAATGGCCAAACACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTCTGGAAGAACCCGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAGAATTTTCTTAACCAAGCTGTTGATGCTAGTTGTGAGGGATTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTCAAACTGAAGAAAGATTATATGGATGAGGCAATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGAAAACGCGCAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAAGAATAATGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCACTGAAGCAGTGCTTGAAGAACGTTCTACTAGTCTTGGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATAGATTTGGAGAAACAATCAATCCCGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCCGACCTGACCATTAGTCCTGTTCACCGTGCTGCAGTGGGCGTAGTAGATCCGAACAAGCTGCATTTAACTTTTTTGGTGGCACTTGTACATTTTTCTGTAAAGGGCATATCTCTTCGATTTCCTAGACTAGTGCGAGTGCGGTCTGACAAAACTCCTGAAGAGGCCACATCATCTGAGCAGGTTGCTGAATTGTATAGCGCTCAAAAACACACTCACACCACGAACAACCAACGTGACAACGATGATGATGAAGATGAGTAG 2508 0.4633 MLALHFRPCFPIRVSSLFSFPFPSSLSSVPLRAMSKKPPSAFDALMLGARAAADRKKSQSKSKPQPSSSSLKKRKIPPSSCTLNPNNLKAPKQPPSPPKIAEPQEPDVKPEEPDVKPEEPDVKPEEPAVKPEELAVKPQEPAVETEPRKVRRVSTSSSSASKEKTAELKEQVAQLMKKPSDFDPSSITACEKGQPLPFLFLCLAFDMISKESGRIVITDIVCNLLRTVMHATPEDLLPVVYLSTNRIAPAHAGVELGIGESSITKALAEAYGRTEALIKAQYQTRYQKKGDLGLVAKESRMSQSMMWKPEALTIRKVFNTLHRIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPDIQSPLEEASKIVKEIHSVLPDYDKIISALLTEGVWMLPKNCTFTPGVPIRPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLANGSVEIYSRNAERNTEKYPDIVASVSRLKKPTVSSFILDCEIVAYKRKTHEIQSFQVLSTRARKNVAIKDISVDVCIYAFDLLYVNGQTLLQENLRVRREHLYASFLEEPGFLQFATTITSNDVEEIQNFLNQAVDASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDEAIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDKNNEEFQSICKIGTGFTEAVLEERSTSLGSKVIPKPKAYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAVGVVDPNKLHLTFLVALVHFSVKGISLRFPRLVRVRSDKTPEEATSSEQVAELYSAQKHTHTTNNQRDNDDDEDE 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0579 835 MobiDBLite consensus disorder prediction 798 835 - -
Aed5g0579 835 MobiDBLite consensus disorder prediction 45 165 - -
Aed5g0579 835 CDD OBF_DNA_ligase_I 656 814 - -
Aed5g0579 835 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 435 653 - -
Aed5g0579 835 Gene3D - 657 818 IPR012340 -
Aed5g0579 835 Pfam ATP dependent DNA ligase C terminal region 673 799 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aed5g0579 835 PANTHER DNA LIGASE 1 44 832 - -
Aed5g0579 835 MobiDBLite consensus disorder prediction 62 89 - -
Aed5g0579 835 CDD Adenylation_DNA_ligase_I_Euk 432 650 - -
Aed5g0579 835 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 255 814 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aed5g0579 835 Gene3D DNA ligase/mRNA capping enzyme 472 597 - -
Aed5g0579 835 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 467 475 IPR016059 GO:0003909
Aed5g0579 835 Gene3D - 453 652 - -
Aed5g0579 835 ProSiteProfiles ATP-dependent DNA ligase family profile. 549 686 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aed5g0579 835 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 44 832 - -
Aed5g0579 835 Pfam ATP dependent DNA ligase domain 443 647 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aed5g0579 835 MobiDBLite consensus disorder prediction 806 822 - -
Aed5g0579 835 Pfam DNA ligase N terminus 197 376 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed5g0579 835 Gene3D - 172 445 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed5g0579 835 SUPERFAMILY Nucleic acid-binding proteins 656 817 IPR012340 -
Aed5g0579 835 MobiDBLite consensus disorder prediction 104 151 - -
Aed5g0579 835 ProSitePatterns ATP-dependent DNA ligase signature 2. 621 647 IPR016059 GO:0003909
Aed5g0579 835 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 180 433 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0579 Aed-Chr5 4221599 4228476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0579 32 831 Core DNA Replication Machinery Family AT1G08130 61.875 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0579 K10747 - gmx:100783155 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0579 5 4221599 4228476 Aed5g0579 5 4221599 4228476 ECH