LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0579	ATGCTCGCATTGCATTTCCGACCCTGCTTTCCGATTAGGGTTTCCTCTCTCTTCTCTTTCCCTTTCCCTTCCTCTCTCTCCTCCGTCCCTCTCCGCGCAATGTCGAAGAAGCCACCCTCCGCCTTCGACGCCCTCATGCTCGGCGCACGCGCCGCCGCCGATAGGAAAAAATCTCAATCCAAATCCAAACCCCAACCATCATCCTCATCTCTCAAGAAACGAAAAATCCCACCCTCCTCTTGCACGCTAAACCCTAACAACCTCAAAGCCCCCAAACAACCCCCTTCCCCACCCAAAATCGCTGAACCGCAAGAACCCGACGTCAAACCGGAAGAACCAGACGTCAAACCGGAAGAACCAGACGTCAAACCGGAAGAACCCGCCGTTAAACCGGAAGAACTCGCCGTTAAGCCGCAAGAACCCGCCGTTGAGACGGAACCGCGGAAGGTCCGCCGCGTGTCAACTTCTTCTTCTTCTGCGTCGAAGGAGAAGACCGCGGAGCTGAAGGAGCAAGTTGCGCAGCTGATGAAGAAACCCTCCGATTTCGATCCCTCTTCGATAACCGCGTGCGAGAAGGGCCAGCCGCTGCCGTTCCTCTTCCTCTGCTTGGCCTTCGACATGATTTCTAAAGAAAGCGGAAGGATCGTCATCACTGACATTGTTTGCAATCTTCTGAGGACTGTCATGCACGCCACGCCGGAGGATCTTCTCCCCGTTGTTTACCTCTCCACTAACCGCATTGCCCCGGCGCACGCCGGGGTGGAATTGGGAATTGGCGAGTCTTCCATTACCAAGGCGCTTGCTGAGGCCTACGGAAGGACCGAGGCGCTGATCAAGGCTCAGTATCAGACTCGGTATCAGAAAAAAGGGGATTTAGGCTTGGTTGCTAAAGAGAGCCGTATGTCTCAGTCTATGATGTGGAAGCCTGAGGCATTGACTATTAGGAAGGTTTTCAACACTTTGCACCGTATTGCTAAGGAATCTGGAAAAGATAGTCAAGAGAAGAAAAAGAACCATATTAAGGCACTTCTTGTCGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGCTATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAGGAACACTCTAAACCGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTCGAAGATTGTTAAAGAAATCCATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTGTATGGATGCTTCCAAAGAATTGTACTTTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACCTGGCGAATGGCTCAGTTGAGATTTACAGTAGAAATGCAGAACGGAACACTGAGAAGTATCCTGATATTGTTGCTTCCGTTTCAAGGTTAAAGAAACCAACGGTATCATCGTTTATTCTTGATTGTGAAATTGTTGCATATAAACGTAAAACACATGAGATCCAATCTTTCCAGGTGCTTAGTACTCGGGCTCGCAAGAATGTAGCAATAAAAGATATATCGGTTGATGTTTGCATATATGCTTTTGATTTGTTGTATGTCAATGGCCAAACACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTCTGGAAGAACCCGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAGAATTTTCTTAACCAAGCTGTTGATGCTAGTTGTGAGGGATTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTCAAACTGAAGAAAGATTATATGGATGAGGCAATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGAAAACGCGCAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAAGAATAATGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCACTGAAGCAGTGCTTGAAGAACGTTCTACTAGTCTTGGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATAGATTTGGAGAAACAATCAATCCCGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCCGACCTGACCATTAGTCCTGTTCACCGTGCTGCAGTGGGCGTAGTAGATCCGAACAAGCTGCATTTAACTTTTTTGGTGGCACTTGTACATTTTTCTGTAAAGGGCATATCTCTTCGATTTCCTAGACTAGTGCGAGTGCGGTCTGACAAAACTCCTGAAGAGGCCACATCATCTGAGCAGGTTGCTGAATTGTATAGCGCTCAAAAACACACTCACACCACGAACAACCAACGTGACAACGATGATGATGAAGATGAGTAG	2508	0.4633	MLALHFRPCFPIRVSSLFSFPFPSSLSSVPLRAMSKKPPSAFDALMLGARAAADRKKSQSKSKPQPSSSSLKKRKIPPSSCTLNPNNLKAPKQPPSPPKIAEPQEPDVKPEEPDVKPEEPDVKPEEPAVKPEELAVKPQEPAVETEPRKVRRVSTSSSSASKEKTAELKEQVAQLMKKPSDFDPSSITACEKGQPLPFLFLCLAFDMISKESGRIVITDIVCNLLRTVMHATPEDLLPVVYLSTNRIAPAHAGVELGIGESSITKALAEAYGRTEALIKAQYQTRYQKKGDLGLVAKESRMSQSMMWKPEALTIRKVFNTLHRIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPDIQSPLEEASKIVKEIHSVLPDYDKIISALLTEGVWMLPKNCTFTPGVPIRPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLANGSVEIYSRNAERNTEKYPDIVASVSRLKKPTVSSFILDCEIVAYKRKTHEIQSFQVLSTRARKNVAIKDISVDVCIYAFDLLYVNGQTLLQENLRVRREHLYASFLEEPGFLQFATTITSNDVEEIQNFLNQAVDASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDEAIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDKNNEEFQSICKIGTGFTEAVLEERSTSLGSKVIPKPKAYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAVGVVDPNKLHLTFLVALVHFSVKGISLRFPRLVRVRSDKTPEEATSSEQVAELYSAQKHTHTTNNQRDNDDDEDE	835

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0579	835	MobiDBLite	consensus disorder prediction	798	835	-	-
	Aed5g0579	835	MobiDBLite	consensus disorder prediction	45	165	-	-
	Aed5g0579	835	CDD	OBF_DNA_ligase_I	656	814	-	-
	Aed5g0579	835	SUPERFAMILY	DNA ligase/mRNA capping enzyme, catalytic domain	435	653	-	-
	Aed5g0579	835	Gene3D	-	657	818	IPR012340	-
	Aed5g0579	835	Pfam	ATP dependent DNA ligase C terminal region	673	799	IPR012309	GO:0003910\|GO:0006281\|GO:0006310
	Aed5g0579	835	PANTHER	DNA LIGASE 1	44	832	-	-
	Aed5g0579	835	MobiDBLite	consensus disorder prediction	62	89	-	-
	Aed5g0579	835	CDD	Adenylation_DNA_ligase_I_Euk	432	650	-	-
	Aed5g0579	835	TIGRFAM	dnl1: DNA ligase I, ATP-dependent (dnl1)	255	814	IPR000977	GO:0003910\|GO:0005524\|GO:0071897

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0579	Aed-Chr5	4221599	4228476	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0579	32	831	Core DNA Replication Machinery Family	AT1G08130	61.875	0.0	990

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0579	K10747		-	gmx:100783155	1200.65

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed5g0579	5	4221599	4228476	Aed5g0579	5	4221599	4228476	ECH

Showing 1 to 1 of 1 entries