Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0569 ATGGGAAGAGCTCCATGTTGTGACAAAGCAACTGTTAAGAGAGGACCATGGTCCCCAGAAGAAGACACAAAGCTGAAGGAGTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAAAAAGCTGGACTTAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTCAACTATCTCAGGCCTAATATTAAGCATGGAGATTTCTCTGACGAGGAAGACAGAATAATTTGCAGTCTTTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGGACAGACAATGATATCAAGAACTACTGGAACACAAAGTTGAAGAAAAAACTCATGGGGTTGCTTCCTCTTTATTCTCATCACAGTAGAAAACAACCTTCATTTCCATCCTCTACCCTTCAAAACCCTCCACCCTCTCCTTCATCTCACCAACTATACGGAGAGTACTGCACCTACAGCCCAATAACAACAACAACCACATCTTTCACAAGTAATAATAACATTGAACCCTTTTCCCTTCCCTCAAGTAATAATAACTATGCAAGCACAACAACAACCTCAGTTTCTCACCCCTTTTACCAAAACCAAGACTCCATGCAATGCTATTACCCTATGAAAGACAGCATGCTTATGTTTGGAAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCAGAGAAATCAAACAAGAAGAAATTGGTTACCCTAACTACAATAATAATGATAACTTTATGCTTAGTTACAGCAACGTTATGAATGACGGAGAAAAGTCATGTGTTGGTGAGTGCTTTAGCCAAACTCTACTAACACAGTTGGATTATGATCTCGAGGATATTAAGCAATTGATTAGTAGCAGCAGTACTAGCACTACTAGCTTCAATAATGTTGTTGATGAAAACAAGACAGAAGAGAAGTCCATGTATTACTACTACTACTAG 957 0.3971 MGRAPCCDKATVKRGPWSPEEDTKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLYSHHSRKQPSFPSSTLQNPPPSPSSHQLYGEYCTYSPITTTTTSFTSNNNIEPFSLPSSNNNYASTTTTSVSHPFYQNQDSMQCYYPMKDSMLMFGSEGSCSSSDGSCREIKQEEIGYPNYNNNDNFMLSYSNVMNDGEKSCVGECFSQTLLTQLDYDLEDIKQLISSSSTSTTSFNNVVDENKTEEKSMYYYYY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0569 318 Gene3D - 69 138 - -
Aed5g0569 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed5g0569 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aed5g0569 318 MobiDBLite consensus disorder prediction 128 147 - -
Aed5g0569 318 CDD SANT 16 62 IPR001005 -
Aed5g0569 318 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed5g0569 318 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aed5g0569 318 Gene3D - 7 68 - -
Aed5g0569 318 SMART sant 13 64 IPR001005 -
Aed5g0569 318 SMART sant 67 115 IPR001005 -
Aed5g0569 318 PANTHER TRANSCRIPTION FACTOR RAX3 1 298 - -
Aed5g0569 318 PANTHER OS09G0431300 PROTEIN 1 298 - -
Aed5g0569 318 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed5g0569 318 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aed5g0569 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0569 Aed-Chr5 4155493 4157111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0569 1 119 MYB Transcription Factor Family AT5G57620 89.076 7.69e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0569 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0569 K09422 - gmx:100779919 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0569 5 4155493 4157111 Aed5g0569 5 4155493 4157111 ECH
Aed1g1093 1 10778337 10779993 Aed5g0569 5 4155493 4157111 PCT