Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0567 ATGCAGAAATCGGGGTACGGTGGCGACGGAATATACAGGTCTCTAAGACCTCCTTTGGTTCTTCCAAAGGACCCAAACCTCTCACTCGTCGCATTCCTCTTCCAAAGTGTTTCATCTTTCCAATCCAAGACGGCTCTCGTTGATGCAGATTCTTCCAAAACACTTACCTTCGCGCAGCTCAAATCCCAAGTTGCTAAGCTCGCCCACGGTTTCATCAAACTAGGCTTAACCAAAAACGACGTCGTCCTCCTCTTCACTCCCAACAGCATCCACTTCCCCGTATGCTTCCTCGCCGTCACCGCCATCGGAGCCGTCGTATCCACCGCCAATACCGTTTACACCATCGCCGAAGTCACGAAACAAGTCAACGACTCCAACCCCAAGCTCGTCATCACTGTCCCCAAATTATGGAACAAATTAGCCAAGAACCTCAACCTCCCGGCCGTAATTATCGGGACTACGTCGGAACTCATAAGTTTCGAAGCTCCGAAAACTATGAGTCTTGACGCAGTGATGGAGATGGCAGGGCCGGTGACGGAGCTGCCGGAGAGTGGTGTGAAGCAGGGGGACACGGCGGCGCTTTTATACTCATCGGGAACGACGGGGTTGAGCAAGGGCGTGGTGGTGACGCACAGGAACTTCATAGCGGCGTCGGTGATAATGGGCAGCGGGGAGCAAAGCGACGTGTACATATGCGTTTTGCCGATGTTCCACGTGTTCGGGCTGATGGTTGTGACGTACGCGCCGCTTCGGCGAGGGTGCGCAGTGGTGGTGATGGGGAGATTCGAGTTGGAGGCGCTGCTGAAGGCGATTGAGAAGCACAGGGTTACGAAACTGTTGCTGGTGCCTTCGATCGTGCTTGCTCTGGCGAAACAGAGCGTGGTTCGGAACTACGATCTTTCCTCGCTCAGGCTCATTGGTTCGGGTGCGGCTCCTCTTGGGAAAGAGTTGATGGAAGAGTGCGCCAGGCGTTTTCCTCATGCTGCAATTTGTCAGGGTTATGGTATGACAGAAGCTTGTGGCAATATTACTCTGGACAATCAAAACGTAGGGGTTCGTCGTCATAGTGGTTCAGCGGGAACGCTCTGTTCAGGATTCGAAGCTCAAATAGTGAGTGTGGATACAGAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGAGTCCTAGCATCATGCAAGGTTATCACAACAATCCACAAGCCACCAGGTTCACTATAGATGAAAATGGATGGTTACATACAGGGGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTTATCAAGTACAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATATTAGAGGCTGTTGTAGTTCCATATCCCGATGATGAGGCTGGTGAGGTTCCAGTTGCCTACGTTGTTCGCTCTCCCAATAGTTCACTCGCCGAAGAACAAGTTAAGAAGTTTATTGCTAATCAGGTTGCACCTTTCAAAAAATTGCGAAGGATAACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCAAAATCCAAAATATAA 1620 0.4994 MQKSGYGGDGIYRSLRPPLVLPKDPNLSLVAFLFQSVSSFQSKTALVDADSSKTLTFAQLKSQVAKLAHGFIKLGLTKNDVVLLFTPNSIHFPVCFLAVTAIGAVVSTANTVYTIAEVTKQVNDSNPKLVITVPKLWNKLAKNLNLPAVIIGTTSELISFEAPKTMSLDAVMEMAGPVTELPESGVKQGDTAALLYSSGTTGLSKGVVVTHRNFIAASVIMGSGEQSDVYICVLPMFHVFGLMVVTYAPLRRGCAVVVMGRFELEALLKAIEKHRVTKLLLVPSIVLALAKQSVVRNYDLSSLRLIGSGAAPLGKELMEECARRFPHAAICQGYGMTEACGNITLDNQNVGVRRHSGSAGTLCSGFEAQIVSVDTEKPLPPRQLGEIWVRSPSIMQGYHNNPQATRFTIDENGWLHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPVAYVVRSPNSSLAEEQVKKFIANQVAPFKKLRRITFINSVPKTASGKILRRELTAKAKSKI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0567 539 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Aed5g0567 539 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 538 - -
Aed5g0567 539 Gene3D - 10 436 IPR042099 -
Aed5g0567 539 SUPERFAMILY Acetyl-CoA synthetase-like 24 536 - -
Aed5g0567 539 CDD 4CL 21 531 - -
Aed5g0567 539 Gene3D - 437 539 IPR045851 -
Aed5g0567 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 538 - -
Aed5g0567 539 Pfam AMP-binding enzyme 35 441 IPR000873 -
Aed5g0567 539 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0567 Aed-Chr5 4139338 4141866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0567 1 539 Monolignol Biosynthesis Gene Families AT4G05160 63.553 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0567 K01904 - gmx:100808944 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0567 5 4139338 4141866 Aed5g0567 5 4139338 4141866 ECH
Aed1g1094 1 10791253 10795323 Aed5g0567 5 4139338 4141866 PCT