Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0564 ATGGTGTCCGACGCCAGTAAGAAGAAGGCCGCACAGAAGAAGGCCGCCGCCGCCGCCAAGAGAGGTGGCAAGGCTGCCGCCGCCGCCGTTATGGCCGCCGCTTCTTCCAAAGCCGCCGATAAGGTCGCCAACGGAATCGCCGATTTTCATATATCGGATCGGACCTGCACCGGCGTCCTCTGTTCGCATCCTCTTTCCAGAGATATTCGAATAGAGTCACTATCTGTTACGTTCCATGGACATGATCTCATTGTTGATTCAGAATTGGAGCTAAATTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAGTCTACACTGCTTACTGCCATTGGTTGTCGAGAACTTCCAATTCCTGACCACATGGATATCTATCACCTAACCAGGGAGATTGATGCCTCTGACATGTCTGCTTTGGAAGCTGTCATAAGCTGCGATGAAGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGTTTTGGCTGCACAGGATGATGGAGGTGGTGAATCCCTTGAACGCATTTATGAACGATTGGAAACCCTAGATGCAGCAACTGCAGAGAAGCGTGCTGCTGAAATCTTACATGGTCTTGGCTTCGATAAGCAAATGCAGGCAAAGAAAACACGTGATTTTTCCGGTGGCTGGAGGATGAGGATTGCATTAGCGCGTGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCATCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTCCTTAATGGTGTCTGCACAAGTATTATCCACATGCAAAGCAAAAAACTGAAGCTCTACACTGGTAACTATGATCAATATGTCCAGACACGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTTCCTCAATGAAGGAATATATTGCCCGATTTGGCCATGGTTCTGCAAAACTAGCTCGCCAGGCACAGAGTAAGGAAAAAACACTGGCAAAAATGGAACGTGGTGGACTTGCAGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTTCGTTTTACAGATGTGGGAAAACTCCCCCCTCCTGTTCTCCAGTTTGTGGAGGTGTCATTTGGTTATACTCCTGAAAACCTCATCTACAAGAATATTGACTTTGGGGTTGATCTAGATTCTAGGGTTGCACTGGTTGGACCCAATGGTGCTGGGAAGAGTACACTGCTGAAGCTAATGACAGGTGAGTTGATGCCTAGTGATGGCATGGTAAGGCGTCATAATCATCTCCGAATTGCACAATATCACCAGCATTTGGCAGAAAAGCTAGACATGGAAGTGTCTGCTCTCCAGTATATGATTAGAGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCAGCGATTGGGAAGTTTGGGCTGTCGGGTAAAGCCCAGGTGATGCCAATGAAGAACTTGTCTGACGGGCAGAGGAGCAGAGTGATATTTGCTTGGTTAGCATGGAGGCAGCCTCAAATGCTTCTATTGGATGAGCCAACAAATCATTTGGATATCGAGACAATAGACTCGTTGGCTGAGGCATTGACTGAATGGGACGGTGGCTTGGTGCTTGTGAGCCATGACTTCAGGCTTATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTGATCAATCTGTGACCAGATGGGGGGGTGACATTATGGAATTCAAGGCACATCTCAAGTCAAAGGCCGGTTTATCTGACTGA 1788 0.467 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVMAAASSKAADKVANGIADFHISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIDASDMSALEAVISCDEERLRLEKEAEVLAAQDDGGGESLERIYERLETLDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTSIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPENLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELMPSDGMVRRHNHLRIAQYHQHLAEKLDMEVSALQYMIREYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALTEWDGGLVLVSHDFRLINQVAHEIWVCADQSVTRWGGDIMEFKAHLKSKAGLSD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0564 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Aed5g0564 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
Aed5g0564 595 Pfam ABC transporter 280 356 IPR032781 -
Aed5g0564 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Aed5g0564 595 Coils Coil 287 307 - -
Aed5g0564 595 Gene3D - 345 593 IPR027417 -
Aed5g0564 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Aed5g0564 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Aed5g0564 595 SMART AAA_5 405 572 IPR003593 -
Aed5g0564 595 SMART AAA_5 93 295 IPR003593 -
Aed5g0564 595 CDD ABCF_EF-3 380 571 - -
Aed5g0564 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Aed5g0564 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 578 IPR027417 -
Aed5g0564 595 CDD ABCF_EF-3 69 286 - -
Aed5g0564 595 PANTHER - 1 595 - -
Aed5g0564 595 Gene3D - 69 333 IPR027417 -
Aed5g0564 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0564 Aed-Chr5 4113962 4117661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0564 380 586 Calmodulin-binding Proteins AT2G36910 25.316 2.63e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0564 K06185 - gmx:100809491 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0564 5 4113962 4117661 Aed5g0564 5 4113962 4117661 ECH
Aed1g1096 1 10814241 10818848 Aed5g0564 5 4113962 4117661 PCT