Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0558 ATGGGTGATGTTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTGACAGGAAGAGAGCAAACCTTCATATCCTCAGTGGCTTCCCCAATGGTCCCAACCGACACCACAGCAAATTTCGCACTACCAGTCGATTCAGAGCACAAAGCCAAAGTCTTCAAACTCTTCTCTCTGGCAAATCCCCACATGAGAACCTTCCACTTGTCATGGATATCCTTCTTCACCTGCTTCGTCTCAACCTTCGCAGCGGCGCCACTCGTCCCTATCATCCGCGACAACCTCAACCTCACCAAAAGCGACATCGGCAACGCCGGAGTGGCCTCCGTCTCCGGAAGCATATTCTCCAGGCTGACAATGGGTGCAGTCTGCGACCTCCTGGGGCCGCGCTACGGCTGCGTATTCCTCATCATGCTCACTGCACCCACCGTCTTCTGCATGTCGTTCGTGAACGATGCTGCCGGGTACATAGCGGTGAGGTTCATGATTGGGTTCTCTCTGGCGACGTTTGTGTCGTGCCAGTACTGGATGAGTACTATGTTTAATGGTAAGATTATAGGGCTTGTGAATGGGACTGCTGCCGGGTGGGGGAACATGGGTGGTGGGGCCACTCAGCTCATAATGCCTTTGGTCTATGAGTTGATTAGAAGGGCTGGGGCTACTCCTTTCACTGCATGGAGGCTTGCTTTCTTCCTCCCTGGTTGGATGCATGTGGTTATGGGGATTCTCGTCCTAACCCTAGGACAAGATTTGCCTGATGGCAACCTAGGTGCCTTGCAGAAGAAGGGTAATGTTGCCAAAGACAAATTTTCCAAGGTTTTATGGTATGCCATAACAAATTACAGGACATGGGTTTTTGCCCTCCTCTATGGCTACTCTATGGGAGTTGAATTAACCACCGACAATGTCATTGCTGAGTTTAATCTGAAGCTACATACCGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAATCTGCTGGCTCGTCCCTTTGGTGGATACACATCAGATGTAGCAGCCAGGTTGTTCGGCATGAGGGGAAGACTTTGGAACCTGTGGATCCTCCAAACCCTAGGAGGTGTTTTCTGCATATGGCTTGGTCGTGCCAACTCCCTCCCCATTGCAGTCTTGTCCATGATCCTCTTCTCCATCGGTGCTCAAGCCGCATGCGGTGCAACTTTTGGCATCATTCCCTTCATCTCAAGGCGTTCTCTTGGGATCATATCAGGCCTAACCGGTGCAGGTGGAAACTTCGGGTCTGGTTTGACACAGTTGGTCTTCTTCTCAACCTCGAGTTTCTCAACTTCCACTGGTCTCTCTCTTATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGGCTCTTGTCCACTTCCCTCAGTGGGGTGGCATGTTCTTTCCTGCTTCTAAAGATATCAACAAGTCCACTGAGGAATACTATTACACCTCTGAGTGGAACGAGGAAGAGAAGCAAAAGGGTTTGCACCAGAATAGTCTCAAGTTTGCTGAGAATAGCCGTTCTGAGAGAGGTCTGACTTTGTACGATGTGGGCAACGGAGAACAAAATACGCAGATTCAGGATGGAGAGTTGTTAATTAGCTGGTGA 1599 0.5016 MGDVEGSPGSSMHGVTGREQTFISSVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCVFLIMLTAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRLAFFLPGWMHVVMGILVLTLGQDLPDGNLGALQKKGNVAKDKFSKVLWYAITNYRTWVFALLYGYSMGVELTTDNVIAEFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWNLWILQTLGGVFCIWLGRANSLPIAVLSMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSSFSTSTGLSLMGVMIVCCTLPVALVHFPQWGGMFFPASKDINKSTEEYYYTSEWNEEEKQKGLHQNSLKFAENSRSERGLTLYDVGNGEQNTQIQDGELLISW 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0558 532 Pfam Major Facilitator Superfamily 69 420 IPR011701 GO:0022857|GO:0055085
Aed5g0558 532 SUPERFAMILY MFS general substrate transporter 59 455 IPR036259 -
Aed5g0558 532 CDD MFS_NRT2_like 65 453 IPR044772 GO:0015112
Aed5g0558 532 Gene3D MFS general substrate transporter like domains 264 459 IPR036259 -
Aed5g0558 532 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Aed5g0558 532 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 512 IPR044772 GO:0015112
Aed5g0558 532 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0558 Aed-Chr5 4085913 4088454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0558 1 508 Inorganic Solute Cotransporters AT5G60770 80.117 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0558 K02575 - gmx:100807710 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0558 5 4085913 4088454 Aed5g0558 5 4085913 4088454 ECH
Aed1g1100 1 10857826 10859647 Aed5g0558 5 4085913 4088454 PCT