Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0553 ATGATGATGAATCTTCCTAACGAGACAAGGAAGGTTCCTTTTGTTGTAGTTGTTGTAATATTAATAAACTTGATTGCGGGACCTAGGCTAATATTTTGTCAGAAGACGAGTGGGAGTGGTGGCGGCGGCGGCGGTGGTGCTGCTGGTGCTGGCCTGGAGATATTCGCCCAAGAAATATATCGTAGCATGTCCAATTATACATCTGTGTTCAAGAGTGCAATAAAAAAGGAATTGGGTTATTGCATAGCTGATGTGGACAATGATTGGAATGGGGCATTCAATTTCAGCAAAGATCTCAACTTTTTGACACTTTGTACACAACAATTGAAAGGAGATATTACACAACGAATGTGCACAGAAGCAGAAATACAAGCTTACGGGCAAAGTTTTGCGGGTGGGAAGGCAGGAAGCCAATCAAGTTTTTTAAAGCCAAATATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGTTGGGGTTGTAAAGCTAACCAGAAAGTAGACATTGGTACTAACAGGAAAGACATGCCTATTAGATCTGATGATTGCCAACCCTGTTGTGAAGGCTTCTTTTGCCCTCATGGCCTCACTTGCATGATACCTTGCCCGTTAGGGGCTTATTGTCCACGTGGAGAACTTAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAGCTTCCTCCTGGAAAGCCTAATCATACTTGTGGTGGGGCAGATATTTGGGCCGATATTCAGAGTAGTGGCGAGGTTTTCTGTCCAGCTGGCTCAGTTTGTCCCTCTACAATTATCAAAAATCCTTGCAGCAGAGGGTTTTATTGTAGAACAGGTTCTACTACTCAGGAGCGGTGTTTCAAGTTGGCATCTTGTGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTGGCTGGTTTGTGCTTTTTGCTTATTATCATATACAATTGCTCTGACCAAGTTCTTGCAACTCGAGAAAAAAGACTAGCAAAATCAAGAGAAAGGGCTGCACAAAGTGTGAGAGAATCACAAGCACGTGAGAAATGGAAATCTGCAAAAGACATAGCTAAAAAGCATGCAGTAGGACTACAATCACAGTTATCACGTACATTTTCTCGCAAACCTTCAAAGAAGTCAGATTTGAAAGGCTTTGGTTCTAAGCATTCAGATCCTGCTGTACCACCTGCTGTTCCATCAAAAGGAGGAAAGAAAAAGGACAAAAACAATCTCACCAAAATAATAAACGATATTGAGGAAAATCCTGATAATCCAGAAGGGTTTAATGTTCATATAGGAGACAAAAATGTCAAAAAACAAGCACCAAGGGGCAAGCAATTGCATACTCAGAGTCAAATTTTTAAGTATGCATATGGCCAGATTGAGAAAGAAAAGGCCTTAGCAGAACAGAACAAAAACTTAACCTTTTCTGGAGTGATTTCAATGGCTAATGATATTGAGATAAGGAAGAGACCTACCATTGAGGTTGCTTTTAAGGATTTAACCCTCACTTTGAAAGGGAAAAACAAACACTTGTTGAGATGTGTGACTGGTAAAATATTTCCTGGTAGAGTTTCAGCAGTGATGGGCCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAGCTGGATGTCACACAACTGGCCAAGTTCTTGTAAATGGTAAAGAATCTTCTATCAGTTCATTCAAGAAAATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAACTCTCTGCTGATCTACCAAAAGAAGAGAAGAGTTATTGAGTCATTAGGTTTACAGGCAATAAGGGATTCTCTAGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGGTTGGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCCACCTCTGGTTTGGATAGCTCATCTTCTCAGTTACTGCTTAGAGCACTTAGACGTGAAGCTCTTGAAGGAGTGAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGATGATTTTATACTACTTGCAAAGGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTTTCAGGGATGGGAATCAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATCTTAGAAGGAATAGTAAAACTAAGCCCAAGCTTAGGAGTGACCTACAAGCAACTACCTGTTAGATGGATGCTTCATAATGGCTACCCTGTGCCAATGGATATGCTACAAAGTGTTGAAGGAATGGCTGCCCCAACTGGTGAAGGTTCATCACACGGAGCAGCCGCTATTGGACCGAACGATGATGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTCAAGTGCAATGTTGAGATGAAAAAGGACAACTTTCACCTTAACTTCTTGAGTTCAAATGATTTGTCTGATCGAGCTGTGGATTTTTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGAACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGCTTTAAGATCATTCTCATTGGATAAGTTGCACTATTGGAGAGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTACTTTCTATCAAAGGACACTGTTGACCATTTTAGCACAATTATCAAACCACTGGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCACAGATAACTACATGGTTCTACTGTGCTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCCATCTTTCTTCAACCAGGTCCAGCACAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTGGTAGCAACCTATAGCAATGAAGACAGCAAATATGTGAAATTTCTATCTGACTTGTGCTACACCAAATGGGCCCTTGAAGCATTTGTAATATCAAATGCTAAAAGATACACTGGAGTTTGGTTAATAAGTCGATGTGGTGCCCTCTATACCAATGGCTATGATCTTAAACATTGGTGGCAATGTTTAGGGCTTCTTATCGTAATGGGAATCATTAGTCGAATGCTTGCATTTTTCTGTATGATAACCTTCCAGAAGAAATAG 3165 0.4073 MMMNLPNETRKVPFVVVVVILINLIAGPRLIFCQKTSGSGGGGGGGAAGAGLEIFAQEIYRSMSNYTSVFKSAIKKELGYCIADVDNDWNGAFNFSKDLNFLTLCTQQLKGDITQRMCTEAEIQAYGQSFAGGKAGSQSSFLKPNINCNLSSWVNGCEPGWGCKANQKVDIGTNRKDMPIRSDDCQPCCEGFFCPHGLTCMIPCPLGAYCPRGELNKTSGVCEPYRYQLPPGKPNHTCGGADIWADIQSSGEVFCPAGSVCPSTIIKNPCSRGFYCRTGSTTQERCFKLASCEPKSSNQNITAYGVLAGLCFLLIIIYNCSDQVLATREKRLAKSRERAAQSVRESQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKPSKKSDLKGFGSKHSDPAVPPAVPSKGGKKKDKNNLTKIINDIEENPDNPEGFNVHIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMANDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKIFPGRVSAVMGPSGAGKTTFLSALTGKAAGCHTTGQVLVNGKESSISSFKKIIGFVPQDDIVHGNLTVEENLWFNSLLIYQKKRRVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSGMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMAAPTGEGSSHGAAAIGPNDDEAPSFAGELWQDVKCNVEMKKDNFHLNFLSSNDLSDRAVDFLILLLAGLCLGTLAKVSDESFGATALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYSNEDSKYVKFLSDLCYTKWALEAFVISNAKRYTGVWLISRCGALYTNGYDLKHWWQCLGLLIVMGIISRMLAFFCMITFQKK 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0553 1054 CDD ABCG_EPDR 496 712 - -
Aed5g0553 1054 Pfam ABC transporter 518 657 IPR003439 GO:0005524
Aed5g0553 1054 SMART AAA_5 524 715 IPR003593 -
Aed5g0553 1054 Gene3D - 486 725 IPR027417 -
Aed5g0553 1054 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 839 1051 - -
Aed5g0553 1054 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 45 839 - -
Aed5g0553 1054 MobiDBLite consensus disorder prediction 368 411 - -
Aed5g0553 1054 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 729 IPR003439 GO:0005524
Aed5g0553 1054 MobiDBLite consensus disorder prediction 337 356 - -
Aed5g0553 1054 Pfam ABC-2 type transporter 840 1054 IPR043926 GO:0140359
Aed5g0553 1054 ProSitePatterns ABC transporters family signature. 629 643 IPR017871 GO:0005524
Aed5g0553 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 722 IPR027417 -
Aed5g0553 1054 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 839 1051 - -
Aed5g0553 1054 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 45 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0553 Aed-Chr5 4019703 4027525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0553 525 710 Calmodulin-binding Proteins AT2G36910 27.619 2.20e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0553 - - gmx:100809312 1848.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0553 5 4019703 4027525 Aed5g0553 5 4019703 4027525 ECH