Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0549 ATGAGCAGCTTAAGGCCCGAATTGCACGTTGCACAACAACTTCGGCGCGACAAATTGAGGATCCAAAACAGTTCCCAGCAACACTTGCAAGAGTTCCCTAACAACCTAGAACAGTTGTCGTTACACCCAGGTTTCAACTTGGATCTCCTTCAAGTAAGAAACGTTCGAAATGGCAACAACATGCTTGACGAAGCCGCAGCATTTTATTCATCTGAAATGATATCTTTCTCGAACCCTTTATCTGCTCCTAGAAACCCTTTGGAGTGTCAAGAGCTTATGATGGCTCAGTATGGTTCAACTTCGTTTCCTCATTCTGCATCCCCAAAAGACCAACAACAATGCGAACCACGCAACTTGGGTGGTGCTAATTGGATGGTGAGTTATAACGAAACCAACCCCAACAACAACAACAACACAAACAACACCACCACCACCAACAACACTTTCTTTCCTTCTGAGCTTAATAACAATGTTTCTGGTGAAATGCATTATCATAATAATGCACTGGAGGACATGGCTTATGGAGTTTGGGGAGGGAATAATAATCACGGTGAGCCTGTGCTTCATTATGGAAACCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTGTGGACAAGTTGTAATAATAATAGTCCATTGGGTTTCAAGAAGATCAATGAACAGTTGCAGGAATCAAATCATCCTCATCAGGGTCTATCGTTGTCACTCTCATCAAACTCACAACAACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGTTGTGAAATCCTCCTCATCCACCATGAAGGTGAATGTGCTTTCAAACAACAACACTGTTGTTTATCGAAATGTTGGTCCTCTTGGTCCGTTCACCGGTTACGCCACGATTTTGAAGAGTTCAAGGTTCTTGAGGCCGTGCCAACAGCTGTTGGATGAGTGGTGCTGTCAATCGGGTAATTCAAAGTTTGCAAAGGGAAGGGTTTGTGATGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTACTTCTACTACTTCTGCTCTTAATGTTGATGAAAGTGCTGCTGCTAAAGGTGGTGGCAATTCGGGTGCTTCATCATCTGTGCTGTATAGTTCAAACGAGAATAATAATAATATTAATAATAATACTCATAGCGCTGATGGCGGAGCCGTGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTGGTGTTTTTTTCTCTTTCACTGCTCATGAGTCCCAAGTCTATGCAAGAACAGTACTTGTAGATAACCTTTCAACTGTGTGTGCATTCCACTTTCCGAAAGTACTTTGTTTCTTCCAAAGTCTCATAAGAAAAGAGTTTCAAGGGGATATTATCTTATACCTGGTTATCAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCGTTCGAGTCGGTGGCGGGTCTTAGCTCGGCCACGCCTTACGTCTCCTTGGCTCTCAAGTCAGTGTCGAAACACTTTAGGTGCCTAAAAAATGCGATCTCGGATCAACTGAAGCTTACATTGGAAGTATTGGGAGAGGAGTTTTCAATACCAACCACGAGTACTAGTACTAAATTTGACAACAATAACATGGCGAGGCTAAGGTGCATGGAGCAACAACAAAGCAGCTTTCAAAAAAACAAAACTGGCGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGGTTGCCAGAACGCTCAGTGGCGATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCTACGGACACTGATAAACACATGTTGGCTACCCAAACGGGTCTATCAAGAAACCAGGTGGGGGTGTGGGGGTCTACTTTTGAATTCATTATTATGTCTATAGTCCTTTATCTGTTTGCATGA 1935 0.4326 MSSLRPELHVAQQLRRDKLRIQNSSQQHLQEFPNNLEQLSLHPGFNLDLLQVRNVRNGNNMLDEAAAFYSSEMISFSNPLSAPRNPLECQELMMAQYGSTSFPHSASPKDQQQCEPRNLGGANWMVSYNETNPNNNNNTNNTTTTNNTFFPSELNNNVSGEMHYHNNALEDMAYGVWGGNNNHGEPVLHYGNQANNELRFGGANLWTSCNNNSPLGFKKINEQLQESNHPHQGLSLSLSSNSQQQSKPCFEEGSVVKSSSSTMKVNVLSNNNTVVYRNVGPLGPFTGYATILKSSRFLRPCQQLLDEWCCQSGNSKFAKGRVCDVPEWVSRDVSATSTTSALNVDESAAAKGGGNSGASSSVLYSSNENNNNINNNTHSADGGAVSSFCLSSRPECQKNKAKLLYMQEEVGVFFSFTAHESQVYARTVLVDNLSTVCAFHFPKVLCFFQSLIRKEFQGDIILYLVIRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKLTLEVLGEEFSIPTTSTSTKFDNNNMARLRCMEQQQSSFQKNKTGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVGVWGSTFEFIIMSIVLYLFA 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0549 644 Pfam Associated with HOX 291 515 IPR006563 -
Aed5g0549 644 Pfam Homeobox KN domain 595 627 IPR008422 GO:0003677|GO:0006355
Aed5g0549 644 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 627 - -
Aed5g0549 644 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 31 627 - -
Aed5g0549 644 MobiDBLite consensus disorder prediction 100 152 - -
Aed5g0549 644 CDD homeodomain 578 627 IPR001356 GO:0003677
Aed5g0549 644 SUPERFAMILY Homeodomain-like 573 627 IPR009057 -
Aed5g0549 644 Gene3D - 584 635 - -
Aed5g0549 644 SMART prehox3 286 516 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0549 Aed-Chr5 4002470 4006593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0549 461 627 Homeobox Transcription Factor Family AT2G35940 51.190 3.35e-49 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0549 - - gmx:100793050 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1107 1 10907433 10913699 Aed5g0549 5 4002470 4006593 PCT