Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0542 ATGGGAAGCAAATGGAGAAAGCTGAAGCTGGTTCTTGGTTTGGATTCCTGTGTACACATTCCTAGAGCCTTTGATGATTCCTCCTCCACCGCCACCGCCACCGCCGCAAGGTTTTCCGGCAGTGTCTCACCGGCCGGCGACTCCTCCGGCTACCGCCCCTCCACTCCAACACCATCGTCTTCCGGCCTCCGGTTACTCAAATCCGGCCCCAAATCCCCTAAGGGGACTTGTGCAATATGCCTTTACCCTATGAAACCAGGGCAGGGCCATGCCATTTTCACTGCAGAATGTTCTCACTCTTTCCATTTCCATTGCATCACTTCTAATGTGAAGCACGGGAACCAGATTTGCCCTGTCTGCAGAGCCAAATGGAAAGAAGTTCCTTTTCAGAGTCCAGCGTCAATTACGCCCCATGATCGACTCAACCCGGTATCTCCTCGAGATGAAGGGTGGACGACTGTCGTACGGAGGCTTCCTTCTCCTCAAGGTGACGCTGCTCGGCAGGTTTCATCACTTTATCATGTCACTGAACCGGCTATTTTCGATGATGATGAAGCCCTGGATCAACAAGCTTTAGTTACCCATCCTAAAAATGAGACCGATCATCATCATGATGCAGTAAACACAGTGGAGATTGAAACATATCCTGAGGTTTTCGCTGTTCCAAAATCGTCCTCTCATGATGCCTTTGCTGTGTTAATCCATCTCAAAGCTCCTCATTCAGGGAGAAAACAAAGTATCAGAGAAAACAACACTGAATCACCACCTCCAGTTGTTGAGGACTCACGTGCCTCGGTTGACCTTGTAACAGTTCTTGATGTGAGTGGTAGCATGGCAGGTACCAAGCTAGCGCTGCTGAAACGTGCCATGGGGTTTGTCATTCAGAATCTTGGTCCATCAGACCGGCTGTCTGTCATTGCCTTCTCCTCCACAGCGCGCCGCATCTTTCCTCTTCGGCAGATGACTGACATTGGACGACAGCAGGCGTTGCAGGCTGTCAATTCCTTGGTTTCGAATGGTGGGACAAACATTGCTGAAGGCCTGAGGAAAGGTGCCAAGGTGTTTGCTGACTGCAAGTGGAAGAACTCGGTTAGCAGCATCATACTACTCTCTGATGGGCAGGATACATATACAGTCAACAGCAGGCCTCATGTTGGAACAGATTATCAGTCACTCGTTCCAAACTCCATTCATCGTAACAACGGCACAGGGATGCAGATACCAGTGCATGCATTCGGCTTTGGCTCTGACCATGATGCTACTTCGATGCATTCAATCTCTGAGATATCCGGGGGTACGTTTTCTTTCATTGAAGCTGAGGATGTCATTCAGGATGCATTTGCACAGTGTATTGGAGGACTGTTGAGTGTGGTGGTGCAAGAATTACAAGTAGAGGTTAGGTGTGTTCACCCTCAGTTGCAACTTTGTTCGGTGAAAGCCGGAAGTTACCAAACAAGCTTGATGGAGAATGCAAGACTGGCTACTATCAGTGTAGGAGATTTGTATGCTGAAGAGGAAAGAGACTTTTTAGTGACAGTTAATGTTCCAGTTGATGAGTCAAGTGATGAGACGTCGTTGTTGATCGTGCGAGGTCTTTACCGGGATCCAATAACTAAAGAAATGATGGCTTTGGAAGAAAACAGTGAAGTGAAAATTGTGAGATGTGACGTTGGTGGAGGAGAACTAGTTGGTGTGTCGATAGAGGTAGACAGACAGCGAAATAGGCTTAAAGCGGCTGAGGCAATGGCAGAGGCTAGAGTTGCAGCCGAACACGGTGATTTGTCTACTGCAGTTTCAGTCCTGGATGGCTGTCACAAGGCATTGTCTGAAACTGTTTCTGCTCTGGCTGGGGATCGGTTATGCGTTGCTCTTTCTGCAGAGTTAAAGGAGATGCAAGAGAGGATGGCGAACCAGCGCGTTTATGAGCAGTCTGGAAGAGCTTATGTTCTGTCAGGATTGAGTTCACATTCATGGCAAAGGGCAACAGCACGTGGCAACTCCACAGACAGCACCAGCCTTGTGCAGTCATACCAGACACCTTCTATGGTTGACATGGTGACGCGCTCCCAGACCATGGTTTTTGGGGCACCAATGCCGCAAAATAAACGAGTTCTCAGGCCTGCTAAGTCATTTCCCGAGAGGCAGAGAAGACAATGA 2157 0.4886 MGSKWRKLKLVLGLDSCVHIPRAFDDSSSTATATAARFSGSVSPAGDSSGYRPSTPTPSSSGLRLLKSGPKSPKGTCAICLYPMKPGQGHAIFTAECSHSFHFHCITSNVKHGNQICPVCRAKWKEVPFQSPASITPHDRLNPVSPRDEGWTTVVRRLPSPQGDAARQVSSLYHVTEPAIFDDDEALDQQALVTHPKNETDHHHDAVNTVEIETYPEVFAVPKSSSHDAFAVLIHLKAPHSGRKQSIRENNTESPPPVVEDSRASVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRQMTDIGRQQALQAVNSLVSNGGTNIAEGLRKGAKVFADCKWKNSVSSIILLSDGQDTYTVNSRPHVGTDYQSLVPNSIHRNNGTGMQIPVHAFGFGSDHDATSMHSISEISGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVEVRCVHPQLQLCSVKAGSYQTSLMENARLATISVGDLYAEEERDFLVTVNVPVDESSDETSLLIVRGLYRDPITKEMMALEENSEVKIVRCDVGGGELVGVSIEVDRQRNRLKAAEAMAEARVAAEHGDLSTAVSVLDGCHKALSETVSALAGDRLCVALSAELKEMQERMANQRVYEQSGRAYVLSGLSSHSWQRATARGNSTDSTSLVQSYQTPSMVDMVTRSQTMVFGAPMPQNKRVLRPAKSFPERQRRQ 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0542 718 MobiDBLite consensus disorder prediction 40 66 - -
Aed5g0542 718 SUPERFAMILY vWA-like 268 483 IPR036465 -
Aed5g0542 718 MobiDBLite consensus disorder prediction 40 71 - -
Aed5g0542 718 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Aed5g0542 718 SMART ring_2 77 120 IPR001841 -
Aed5g0542 718 SUPERFAMILY RING/U-box 75 129 - -
Aed5g0542 718 ProSiteProfiles VWFA domain profile. 267 451 IPR002035 -
Aed5g0542 718 Gene3D von Willebrand factor, type A domain 267 452 IPR036465 -
Aed5g0542 718 SMART VWA_4 265 447 IPR002035 -
Aed5g0542 718 Pfam von Willebrand factor type A domain 267 448 IPR002035 -
Aed5g0542 718 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 717 - -
Aed5g0542 718 Pfam VWA / Hh protein intein-like 618 691 IPR032838 -
Aed5g0542 718 Pfam RING-like zinc finger 77 106 IPR001841 -
Aed5g0542 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 129 IPR013083 -
Aed5g0542 718 CDD RING-H2 77 121 - -
Aed5g0542 718 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 3 717 - -
Aed5g0542 718 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0542 Aed-Chr5 3939968 3945676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0542 - - gmx:100818406 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0542 5 3939968 3945676 Aed5g0542 5 3939968 3945676 ECH
Aed1g1113 1 10956066 10960559 Aed5g0542 5 3939968 3945676 ECH