Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0541 ATGAAGCCGCAGCTCAAAATTGCTTTTGCTTTAGTTATTAGCTTGCTCTGGATTCAGCACTCATTTTGTGATGAAACATCTAGCTTAAACAAGTGGAGATGTAGATGTTCTTTCCAAGGGAACCAGTCTCTTGCTAATTGTTCAAAGTCATGTGATTGCCACTCAGATTCTGAAGAGAGTGCATCCTTATGGACATGCATATGTGATTCCAATGGGTTTCCCCAAGTGGCAGCAGATGGTCATAGCCCTAATTGCTTCAATGCTTGCAACTGCACATGGGGAACCGTCAGCAGGCCAGGAGGTTCAAAGAAGAATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAATATGTGTTGTTTGCACAACCATGGCATTTCTTGTCTCACTTATATGCCATGTCTACCGAAGGGACAGATGTACTATTCAATCACCAATTTTCTCAACGGATAAGGAAACAAGTAGTGGTAGTACCACCAACTTGATTAGTCATAGATCAGGGACTTCTTCAGTGCCAGAAACAAAGTATGCAATCAATTCTCCAATTTATCATATCACAGGTTGCTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTATCATGGAAATATTTTTCCATTTTCGTTAGCTGAACTGGAAAATGCAACAGAAAACTTTTCATCTTCCAACCTAATTGGCGTAGGCGGAAGTAGTTATGTATACCTCGGTCGGCTGAAAGACGGTAGCAATGTGGCAGTTAAACGACTAAAAGACCAAGGAGGGCCCGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTGGCTAGACTTCACCATTGTCATTTGGTTCCTTTGCTTGGATACTGCTCAGAGTTAAAAGGAAAACATGTTCAGAGGTTACTAGTATTTGACTACATGGCCAATGGAAATTTGAGGGACTGTTTAGACGGAGTTTCGGGAAAACATGTCGATTGGGCTACTCGTGTTATGATTGCAGTAGGATCTGCAAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGATGTCTTCAGTTTTGGGGTGGTTCTTCTCGAGCTTATCAGCGGTCGCCAACCCATCCATAAATCTACAGGCAAACAAGAAAGCCTAGTTATATGGGCAACTCCTCGCTTACAGGATAGTAGGCGAATAATAACGGAGTTGGTGGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGGTAATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCCGACACTCGACCAACCATGAGCGAGGTTGTTCAGATTCTTTCAAGTATTTCCCCAGGAAAATCTAAGAGGATGAGAAGAAACATTCCAGCCAGCCTCTTTCTGGATCCAGAGGATGCAGAAAAGCAAAGGCAAGCTCCACCCAGTAAATTTCCAACGCATAGTTCATTGCCAATATATAATGATGACAATCTCTCTGTTGAGAACAAAAATATAGCAGAAGATGAAGTTTCAGCTGAGTATATGGAGAGTTTGATCCTCTTGACTTCAAAATCTGATGGCTCTGGTGCATCAGAAGAGGAAATAGTAGACCTGACCGAGCCTAGGTTTGAATCATTTTGCATCACAAATGGCAATGCCCCATGA 1827 0.4215 MKPQLKIAFALVISLLWIQHSFCDETSSLNKWRCRCSFQGNQSLANCSKSCDCHSDSEESASLWTCICDSNGFPQVAADGHSPNCFNACNCTWGTVSRPGGSKKNVSSKIVVVILLICVVCTTMAFLVSLICHVYRRDRCTIQSPIFSTDKETSSGSTTNLISHRSGTSSVPETKYAINSPIYHITGCFQKASFLFGSPKETYHGNIFPFSLAELENATENFSSSNLIGVGGSSYVYLGRLKDGSNVAVKRLKDQGGPEADSAFFKEIELLARLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHVDWATRVMIAVGSARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKQESLVIWATPRLQDSRRIITELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILSSISPGKSKRMRRNIPASLFLDPEDAEKQRQAPPSKFPTHSSLPIYNDDNLSVENKNIAEDEVSAEYMESLILLTSKSDGSGASEEEIVDLTEPRFESFCITNGNAP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0541 608 MobiDBLite consensus disorder prediction 535 549 - -
Aed5g0541 608 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 602 - -
Aed5g0541 608 PANTHER OS01G0253100 PROTEIN 2 602 IPR045271 GO:0004714|GO:0006468
Aed5g0541 608 ProSitePatterns Protein kinases ATP-binding region signature. 228 250 IPR017441 GO:0005524
Aed5g0541 608 SUPERFAMILY Protein kinase-like (PK-like) 202 501 IPR011009 -
Aed5g0541 608 Gene3D Phosphorylase Kinase; domain 1 197 302 - -
Aed5g0541 608 Gene3D Transferase(Phosphotransferase) domain 1 303 519 - -
Aed5g0541 608 SMART serkin_6 222 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0541 608 CDD STKc_IRAK 228 504 - -
Aed5g0541 608 Pfam Protein kinase domain 224 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0541 608 MobiDBLite consensus disorder prediction 519 549 - -
Aed5g0541 608 ProSiteProfiles Protein kinase domain profile. 222 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0541 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0541 Aed-Chr5 3931030 3936884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0541 1 604 Receptor kinase-like Gene Family AT2G28250 50.409 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Aed5g0541 Pkinase 8.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0541 - - gmx:100817870 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0541 5 3931030 3936884 Aed5g0541 5 3931030 3936884 ECH
Aed1g1113 1 10956066 10960559 Aed5g0541 5 3931030 3936884 PCT