Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0538 ATGTTTGCAATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGGGTTGCTGATTGGTAACATGCAGACATACCTCCAATCAACAACCGTGAGGTTAGAAGAGTGGAGGGTGAGAAGAACAGACACAGAACAATGGATGCATCACAGGCAGCTTCCTCCAGAACTAAGAGAATCTGTGAGAAAATACAACCAATACAAGTGGCTGGCCACACGAGGGGTAGACGAAGAAAGTCTCCTGAAAGGACTTCCAGCTGATCTGAGGAGAGACATAAAGCGCCACCTCTGTCTGGAACTGGTGAGACGAGTTCCACTGTTCGATCAAATGGACGAGAGGATGCTCGACGCGATATGCGAGAGGCTCAGGCCCGCGCTCTGCACAGAGAAGACATATCTAGTTCGCGAGGGCGATCCGGTGAACGAGACACTCTTCATAATCAGAGGCCATCTCGATTCCTACACCACGAACGGAGGCCGGAGCGGTTTCTTCAACTCCTGCCGCATCGGCCCGGGGGATTTCTGCGGCGAGGAGCTGCTGACTTGGGCCTTAGGTCCACGTCCAAGCTTCATCCTCCCCTCCTCCACTCGCACCGTCAAAGCCATCTCCGAAGTCGAGGCCTTCGCCCTGATCGCCGAAGACCTCAAGTTCGTGGCCTCGCAGTTTCGAAGACTGCACAGCAAACAACTCCGCCACAAGTTCAGGTTTTATTCGCACCAGTGGAGGACGTGGGCTGCGTGTTTCATACAATCTGCATGGAGACGGTACAAGAAGCGAAAGGAAGCCGCCGAACTGAGAGCGAGGGAGAGTGTTGGTGATGGACCGTATAGATCGGGCTTGGTGCTTGTCTATGCTACCAGGATGGCTAGGAAGGGAGTGCATTGTCTGCGTTCTGGAACAGACTCTGGACTCAACTCTTTGCAGAAGCCAGAAGAACCCGATTTTTCTCTTGATGACTGA 954 0.5273 MFAIVVATLGLVLFGLLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRESVRKYNQYKWLATRGVDEESLLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLRPALCTEKTYLVREGDPVNETLFIIRGHLDSYTTNGGRSGFFNSCRIGPGDFCGEELLTWALGPRPSFILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQSAWRRYKKRKEAAELRARESVGDGPYRSGLVLVYATRMARKGVHCLRSGTDSGLNSLQKPEEPDFSLDD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0538 317 PANTHER - 2 317 - -
Aed5g0538 317 MobiDBLite consensus disorder prediction 298 317 - -
Aed5g0538 317 Gene3D Helix hairpin bin 31 95 - -
Aed5g0538 317 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 317 - -
Aed5g0538 317 SUPERFAMILY cAMP-binding domain-like 34 230 IPR018490 -
Aed5g0538 317 Gene3D Jelly Rolls 102 222 IPR014710 -
Aed5g0538 317 CDD CAP_ED 104 235 IPR000595 -
Aed5g0538 317 ProSiteProfiles cAMP/cGMP binding motif profile. 104 201 IPR000595 -
Aed5g0538 317 SMART cnmp_10 104 235 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0538 Aed-Chr5 3902961 3903914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0538 1 314 Ion Channels AT2G28260 78.413 6.32e-177 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0538 K05391 - gmx:100791992 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0538 5 3902961 3903914 Aed5g0538 5 3902961 3903914 ECH
Aed1g1115 1 10963052 10965755 Aed5g0538 5 3902961 3903914 PCT