Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0534 ATGAAGGACTGTTGGTTTTTTGACAATAATTTCAATGGTCTGTCGGAAGAGACTCTTGATGATGTCATCATGGACATTGAGTTTCTGGATTTGCCCCTTGACTTTGAGGATGAGGGAACTGATTGTGTGGAACATGATTGGGATTCTCAGTTCAAACTCCTTGAAGATCCGCCCCCACCACTTGGAGTTTTTCCAGTACAATCCTCCTCTCAGGAGCTCTGTGGACAAACTCAAAGTCAGAATGCGAAACTCGCCAAGAGCTTCTCTGCTTCTCTATCGAAGACTTCCAGACGTACATATGGCAAAACTATTCCTATCCAGAATGTCTCTTTAAATGGAAAAGATTTGCTCCAATTCCAAATCAACAGCCCAGTTTCTGTTTTCGAAAGCAATAGTAGTTCTCCCTTGGTTGAGAACTCCAACTTTGAGTTACCTGCAATCCCAACAAAGCGTCCTCGAGGAAAACGCCAGCGTCTCTCAAACACCAGCCTGCTATACACTACTCCTTTCATCTTTACTTCACCAGCTTTTCAAAAATGTCAAAGGATAGCTGTCTATGAATCAGACTTAGAAACACAACCTGCTGGGAAATTATTAAGCATGGTAAAAAAGCAGAGGAAAAATGAAAAGGATATTCCCCTGCTAACTAACAAAATTGAGATGAAAAGATCCTCATCACAGGAATCAGTTGCATCCAGAAAATGTATGCATTGTGAGGTGACGAAGACGCCGCAATGGAGAGAGGGACCAATGGGTCCTAAGACCCTATGCAACGCTTGTGGGGTTCGATACCGGTCTGGCCGGCTCTTTGCTGAATACCGGCCTGCAGCTAGCCCCACATTTGTAGCATCATTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATTAGGGACAGAGACACCCAGGTGACTGTTAGATAA 921 0.4387 MKDCWFFDNNFNGLSEETLDDVIMDIEFLDLPLDFEDEGTDCVEHDWDSQFKLLEDPPPPLGVFPVQSSSQELCGQTQSQNAKLAKSFSASLSKTSRRTYGKTIPIQNVSLNGKDLLQFQINSPVSVFESNSSSPLVENSNFELPAIPTKRPRGKRQRLSNTSLLYTTPFIFTSPAFQKCQRIAVYESDLETQPAGKLLSMVKKQRKNEKDIPLLTNKIEMKRSSSQESVASRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRDRDTQVTVR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0534 306 CDD ZnF_GATA 234 281 IPR000679 GO:0006355|GO:0043565
Aed5g0534 306 Gene3D - 229 279 IPR013088 GO:0006355|GO:0008270
Aed5g0534 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 291 - -
Aed5g0534 306 Pfam GATA zinc finger 235 268 IPR000679 GO:0006355|GO:0043565
Aed5g0534 306 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 18 299 - -
Aed5g0534 306 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Aed5g0534 306 PANTHER GATA TRANSCRIPTION FACTOR 18 299 - -
Aed5g0534 306 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Aed5g0534 306 SMART GATA_3 229 279 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0534 Aed-Chr5 3869640 3873543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0534 8 302 C2C2-Gata Transcription Factor Family AT1G08010 37.248 7.91e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed5g0534 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0534 - - gmx:100815208 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1120 1 11006787 11010795 Aed5g0534 5 3869640 3873543 PCT