Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0533 ATGAAGGAAGGTGAGAAGGTGTTGGATCCGCAGCTATGGCTCGCTTGTGCAGGTGGCATGGTTCAGATGCCGCAGCTGAACTCAAAAGTGTTCTACTTTCCACAGGGCCACGCCGAACACGCCCACACCAACATTGATCTCAGAGTTCCGCCACTTATTCTGTGTAACGTTGAAGCCGTTAAGTTCATGGCGGACCCAGAAACAGACGAGGTGTTCGTCAAGTTGAGTTTGGTTCCGCTCAGAAACTCGGAACTCGGTGCTGACTCGGATGGTGCTGCTGATGACGTGGCGGAACCACCTTCTTCTTCTTCTTCTTCGGAAAAGCCTGCGTCCTTCGCCAAGACTCTCACTCAGAGCGACGCAAACAATGGTGGGGGATTCTCGGTTCCGCGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACACGGCGGAGCCTCCGGTGCAGACGGTGGTGGCGAGGGACGTTCACGGGGAGACGTGGAGGTTCCGGCACATTTACCGAGGAACGCCACGTAGGCACCTTCTGACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTCGCTGGGGATTCTGTGGTGTTTTTAAGAGCCGAGAATGGTGATTTGTGTGTTGGGATTCGGAGGGCAAAAAAGGGAATTGGATGTGCTGATCATGGTTCACCTTCAGCTTCAGCTTCGTCGTCTCTGTGGAGTTCAGCTTCTGGGTCTGGGAATTGTGGAATTGGGCCTTATGGGCCTTTTTCTTTTTTCATGAAAGAAGAAAACAAGATGTTAAGGAATGGTTGTGTTGGTGGAAGGGTAAAAGTGAGGCATGAAGATGTTATTGAAGCTGTGAGTCTTGCTGCTAGTAACAAGCCTTTTGAGGTAGTATACTACCCAAGAGCAAGTACTCCTGAGTTTTGTGTTAAGGCTTCTGCTGTGAAAGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAAATGGCCTTTGAAACTGAGGATGCTTCAAGGATAAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGCTTGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTAAGCCCGTGGTTGATTGAATCGGTATCAAACATTCCACTCATCAATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGTCCGCAACACCCGGATTTCCCCCTTGATGTTCAGTTTCCAATACCAATGTTTTCAGGCAACCACCAGCTCGGGCCTAATAGTGCCTTGTGTGGTTTTTCGGATAATGCTCCTGCAGGAATACAGGGAGCCAGGCATGCTCAATTTGGAAAATCTCTATCAGATCTCCACCTTCACAATAAACTGCAGTTGGGGATGCTTCCAACTAATATCCAGCAACAACTTGGAGGAGTGTATACCGCGTTTTCAAATGGTAATAACATGACCAACCATGATAAGATTAAGAGCAAAGAAAGCTTTTCATGTTTTCTAACCATGGGGAAATCTAGCAAGAGTTTGGATAAATCCGATGATGTTAAGAAGCACCAGTTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAGATTTCTAGCTGTTCTGGAGATGTGTTGTCCCATGGAAAAAGATCACTAGGCGATGATAAGGACAAGGCTTCTGCTGCTGCTGAGTTCCCTTGGCTACTTGGCTTGGATACTGGTCATTGCAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTAGACTTGTCGCAGTTCGGTTCTTATGAAGAGCTGTATAGGAGACTTGCCAACATGTTTGGGATTGAAAGGTCTGAGATTCTCAACCATGTGCTCTACTATGATGCTGCAGGTTCTGTTAAGCAAACTGGAGTAGAACCCTTCAGTGACTTCATGAAGAAAGCAAAAAGATTGACTATTCTGACTGATTCAGGCATCAAAAAAATCAAAAGGACCTGGATTACAGGAACTAGGAATGGTGAACATGGACTGGATGCAAACAAAACAGGCCCTCTGAGCATATTTGCTTAA 2025 0.4711 MKEGEKVLDPQLWLACAGGMVQMPQLNSKVFYFPQGHAEHAHTNIDLRVPPLILCNVEAVKFMADPETDEVFVKLSLVPLRNSELGADSDGAADDVAEPPSSSSSSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVVARDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIGCADHGSPSASASSSLWSSASGSGNCGIGPYGPFSFFMKEENKMLRNGCVGGRVKVRHEDVIEAVSLAASNKPFEVVYYPRASTPEFCVKASAVKAAMRIQWCSGMRFKMAFETEDASRISWFMGTISSVQLVTWDEPDLLQNVKRVSPWLIESVSNIPLINFTPFSPPRKKLRPQHPDFPLDVQFPIPMFSGNHQLGPNSALCGFSDNAPAGIQGARHAQFGKSLSDLHLHNKLQLGMLPTNIQQQLGGVYTAFSNGNNMTNHDKIKSKESFSCFLTMGKSSKSLDKSDDVKKHQFLLFGQPILTEQQISSCSGDVLSHGKRSLGDDKDKASAAAEFPWLLGLDTGHCKVFLESEDVGRTLDLSQFGSYEELYRRLANMFGIERSEILNHVLYYDAAGSVKQTGVEPFSDFMKKAKRLTILTDSGIKKIKRTWITGTRNGEHGLDANKTGPLSIFA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0533 674 SUPERFAMILY DNA-binding pseudobarrel domain 105 215 IPR015300 -
Aed5g0533 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 652 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed5g0533 674 PANTHER AUXIN RESPONSE FACTOR 2 652 - -
Aed5g0533 674 ProSiteProfiles PB1 domain profile. 563 643 IPR000270 GO:0005515
Aed5g0533 674 Gene3D - 319 376 - -
Aed5g0533 674 Pfam Auxin response factor 281 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed5g0533 674 Gene3D - 562 648 - -
Aed5g0533 674 MobiDBLite consensus disorder prediction 86 119 - -
Aed5g0533 674 MobiDBLite consensus disorder prediction 98 119 - -
Aed5g0533 674 Gene3D - 110 214 IPR015300 -
Aed5g0533 674 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Aed5g0533 674 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Aed5g0533 674 CDD B3_DNA 112 212 IPR003340 GO:0003677
Aed5g0533 674 SMART B3_2 112 214 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0533 Aed-Chr5 3845334 3848632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0533 1 647 B3 DNA Binding Superfamily AT4G30080 54.124 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed5g0533 B3 2.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0533 - - gmx:100814686 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0533 5 3845334 3848632 Aed5g0533 5 3845334 3848632 ECH
Aed1g1121 1 11017659 11020658 Aed5g0533 5 3845334 3848632 ECH
Aed8g0406 8 3361313 3367049 Aed5g0533 5 3845334 3848632 ECH
Aed2g1849 2 23200831 23204436 Aed5g0533 5 3845334 3848632 ECH
Aed1g1121 1 11017659 11020658 Aed5g0533 5 3845334 3848632 PCT