Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0530 ATGGCTATGGCTGTGGCTCAACACAGGGAAAGTAGCAGCAGTGGCAGCATTGAGAAGCATCTAGATTCTGGAAAGTACGTGAGGTACACTGCTGAGCAAGTTGAGGCTCTTGAAAGGGTCTATGCTGAGTGCCCTAAGCCTAGTTCTCTGAGGAGGCAACAATTGATCAGAGAGTGCCCCATTCTCTGCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGTAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCGGCTTCAGACTGTGAACCGCAAACTCACTGCAATGAACAAGCTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTTTCACAGCTTGTGTGTGAGAATGGGTATATGAAGCAGCAATTACATACTACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCTCAGCATACCATGAGAGATGCTAGTAACCCTGCTGGACTCCTATCAATTGCAGAGGAAACCTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTAGAGCCTGTGGTCTTGTTAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTTCATCTTGGTTCCGGGACTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGAACCATTGAACTGGTTTACACACAGACATATGCTCCAACAACGCTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATATACTACAAGTTTGGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGAACTGGCCCTAATCCAGCTGCTGCTGCTCAGTTTGTAAGAGCTGAAACGCTCCCCAGTGGCTACTTGATCCGACCATGTGAGGGTGGAGGGTCAATCATTCACATAGTAGACCACCTAAATCTTGAGGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAATTGACAATTGCGAATTTGAGTGGCACTTCTAACCCAGCAAATTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGCTGCTTCAAAACGTCCCTCCTGCAGTTTTAGTTCGTTTTCTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCTTCACTGAAGGCTGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAGAATGCTGTTGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGATGCTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCGTTAGATTCAAAACCAGGTGACAAAAAGGATGCAGTTGCTGCGAACCGGACCCTGGATTTGACATCTGGTTTTGAAGTGGGACCTGCAACAACTGCTGGTGCAGATGCATCATCAAGTCAAAACACTCGATCGGTGTTGACTATTGCCTTCCAGTTCCCTTTTGACAGCAGTTTGCAAGATAATGTTGCGGTCATGGCACGTCAGTATGTGCGCAGTGTGATTTCCTCCGTGCAGAGGGTTGCCATGGCTATATCACCATCTGGTATAAACCCATCTGTTGGAGCAAAACTTTCTCCTGGTTCTCCAGAGGCTGTTACACTAGCTCACTGGATCTGCCAAAATTCTCTTGTTGGTGACATGATGCTGAAACATCTGTGGCATCATCAGGATGCCATTCTATGCTGTTCACTGAAGTCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGGCTGGACGCAAGGCATTGTGTACAGACTTTGCCAAGTTAATGGAGCAGGGTTTTGCTTATCTGCCAGCTGGAATCTGCATGTCTACGATGGGGCGCCATGTGTCATATGACCAAGCCATAGCATGGAAAGTGCTTACTGGAGAAGACAACAGCAATGTTCACTGCTTGGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2286 0.465 MAMAVAQHRESSSSGSIEKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILCNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLHTTSAATTDASCDSVVTTPQHTMRDASNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRSSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGTGPNPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKLTIANLSGTSNPANSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVAANRTLDLTSGFEVGPATTAGADASSSQNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGINPSVGAKLSPGSPEAVTLAHWICQNSLVGDMMLKHLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCTDFAKLMEQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNSNVHCLAFSFINWSFV 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0530 761 CDD START_ArGLABRA2_like 158 367 - -
Aed5g0530 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 367 - -
Aed5g0530 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 371 761 - -
Aed5g0530 761 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Aed5g0530 761 Gene3D - 198 366 IPR023393 -
Aed5g0530 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 367 IPR044830 GO:0003700
Aed5g0530 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 371 761 IPR044830 GO:0003700
Aed5g0530 761 SMART HOX_1 22 88 IPR001356 GO:0003677
Aed5g0530 761 Pfam MEKHLA domain 639 760 IPR013978 -
Aed5g0530 761 SUPERFAMILY Bet v1-like 163 353 - -
Aed5g0530 761 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Aed5g0530 761 ProSiteProfiles START domain profile. 154 355 IPR002913 GO:0008289
Aed5g0530 761 Coils Coil 94 121 - -
Aed5g0530 761 CDD bZIP 77 116 - -
Aed5g0530 761 Gene3D - 18 91 - -
Aed5g0530 761 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Aed5g0530 761 CDD homeodomain 25 85 IPR001356 GO:0003677
Aed5g0530 761 Pfam START domain 164 364 IPR002913 GO:0008289
Aed5g0530 761 SMART START_1 163 373 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0530 Aed-Chr5 3817146 3824141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0530 15 761 Homeobox Transcription Factor Family AT4G32880 59.286 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed5g0530 START 1.6e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0530 K09338 - gmx:100804870 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0530 5 3817146 3824141 Aed5g0530 5 3817146 3824141 ECH