Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0525 ATGGCTAAAGATGCTGAGGTTCAAGAGCAAGCAGCAGAATACTCTGCCAAAGACTACCATGACCCTCCTCCAGCACCCTTGTTCGACCCGGAGGAGCTCACACAGTGGTCCTTCTACAGAGCCCTCATCGCTGAGTTCATAGCCACCCTTCTCTTCCTTTACATCACTGTCCTCACCATTATTGGCTACAAAAGACAGACCGATCCCAACCTCGATGGTACCGAGTGTGACGGCGTTGGCATTCTCGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTATACTGCACCGCCGGCATCTCAGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGGCGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATAGTAGCACAGTGTGCCGGTGCTATCTGTGGCACTGGACTGGCCAAAGGGTTCCAAAAATCATACTACGACAGGTATGGAGGTGGTGCCAACTCTGTTGCTGTTGGCTACAACAAGGGCACTGCTTTGGGTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGAGACTCCCATGTTCCTGTGCTGGCACCACTACCTATTGGATTCGCTGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTATAACAAGGAAAAAATCTGGGATGACCAGTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAATTGCTGCATTCTACCACCAATTCATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCAGGAGCAACGCTTAA 861 0.5064 MAKDAEVQEQAAEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYITVLTIIGYKRQTDPNLDGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGTGLAKGFQKSYYDRYGGGANSVAVGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKIWDDQWIFWVGPIVGAAIAAFYHQFILRAAAIKALGSFRSNA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0525 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Aed5g0525 286 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0525 286 PANTHER AQUAPORIN PIP2-7 1 286 - -
Aed5g0525 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Aed5g0525 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Aed5g0525 286 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0525 Aed-Chr5 3772803 3774919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0525 1 286 Major Intrinsic Protein MIP AT2G37170 80.769 9.57e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0525 K09872 - gmx:100818032 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0525 5 3772803 3774919 Aed5g0525 5 3772803 3774919 ECH
Aed1g1125 1 11063274 11064664 Aed5g0525 5 3772803 3774919 ECH
Aed2g1846 2 23172681 23174734 Aed5g0525 5 3772803 3774919 ECH
Aed1g1125 1 11063274 11064664 Aed5g0525 5 3772803 3774919 PCT