Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0517 ATGAGTACAGAGGAAAAGCCTGTGACTGTGAGTGAGGAACATGATGCAGCAGGTCCTTGCAGAAGAACAGTTTCTCTGCCTGTTCAAAAGGTTGATGATCTAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAATCTTCTCAAGAGTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACATATCATTCTCCCGGGCCTTCAACATCAAGAGGAAAATCATCCATAAGAAGCCTCCTTCCAAAACTGAGCTTCAGGTATCGGACACCACCAGCAGATATTGAAAAACCAAATACTCCAGCTCCAGAAGTTTCCTCAACAGGCACCGGAGAAAAGCCTCCAATCTCAAGATCATTGTCTCTTTCTAAGATATTTACTCCTAGGATTAAGAGAACGTCGTCATTACCATTAGATGAAATCAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCCTTAAACAAAAGAGAAGTCCAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACACCAAAGATAAAAGCTTAAGGAGGATGGATTCATTTTTCCGCGTTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGGCCACGCCCACAACAGATGATATCGAAAATGAAGATGCTAACGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAATAGGTCTCAGCTGGAAGATATAAATGGGTACAGGCATAGGCACACTTCTAATTTGTTTGCTCAATTCAATAGGGTTTGGCAGGAAGTCCCAGTGCTTGTCATAGTCAGCATGCTGGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGGTAGGTTTGCAAACATTGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTTCAGTTTGCTCTGGTGGTTCTCTTTGCGCACATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTAGCCACATTTGCGGGCTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTCTTTAGATGGAGGAGAAGAATGCAGGCTCTATCAGAGCAGCAACATGGCCCTCAGCTTATGCCACAAGCAGCACAAAATCCTCGAACTTCAAACACGCCACGTCCAGGTTCAGGTTCAGGTTCAGGTTCTTCCAACCACAGTCAACCTGTGGTGCAAAGTCTACAGAACTCAAATCAGAGCTGA 1632 0.4424 MSTEEKPVTVSEEHDAAGPCRRTVSLPVQKVDDLMGITEETTHVPPRKRQNLLLEIPSRTEESSQEFVAIKMPPTPSSNPTPTPTPKRVNFLVSSRSVDPPTYHSPGPSTSRGKSSIRSLLPKLSFRYRTPPADIEKPNTPAPEVSSTGTGEKPPISRSLSLSKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKREVQRKIARSLSVPANTKDKSLRRMDSFFRVVPSTPRVKEGNELLATPTTDDIENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQLEDINGYRHRHTSNLFAQFNRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMGRFANIVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRMQALSEQQHGPQLMPQAAQNPRTSNTPRPGSGSGSGSSNHSQPVVQSLQNSNQS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0517 543 CDD RING_CH-C4HC3_MARCH 270 318 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 84 117 - -
Aed5g0517 543 Pfam RING-variant domain 270 317 IPR011016 GO:0008270
Aed5g0517 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 325 IPR013083 -
Aed5g0517 543 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 511 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 176 200 - -
Aed5g0517 543 PANTHER OS02G0165000 PROTEIN 25 511 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 497 543 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 129 164 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 1 19 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 141 164 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 1 21 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 37 117 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 56 74 - -
Aed5g0517 543 MobiDBLite consensus disorder prediction 177 193 - -
Aed5g0517 543 SUPERFAMILY RING/U-box 266 321 - -
Aed5g0517 543 SMART ringv_2 269 318 IPR011016 GO:0008270
Aed5g0517 543 ProSiteProfiles Zinc finger RING-CH-type profile. 262 324 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0517 Aed-Chr5 3728366 3732996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0517 252 324 C3H Transcription Factor Family AT2G37950 44.595 1.78e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0517 - - gmx:100815566 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0517 5 3728366 3732996 Aed5g0517 5 3728366 3732996 ECH
Aed1g1132 1 11091950 11095711 Aed5g0517 5 3728366 3732996 PCT