Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0516 ATGGCGGAACCTCTCTCAAACACTGAACTCTCTCCTTCTGAAACTCTATGCCCAACCAATGGCCATGATTCCACTTCGGAGCCGCATCCAACGGCTCCGGAACACACTCAACTCAATCCAGAAGACGACGTCGTTCTGACCGCGAAACGGAAGAGGGATGACGACGACGAAAAAGACCGTTCGGTCCATCCACTGTGGAAGACCAGCCTCTGCTCCTACTTCCGGAGCCACAATGGATCGTGCAGCCACGGCGCCACATGCCGCTACGCGCACGGCGAGGAGGAGCTCCGCCTCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCATGCTAAGAAGGTGTTGAAGACCGAGACTGACGAAAAGCGCGCCGTCTCGGAGGAAGTTATGATGACGGAGGCCGTCGTCGACAGTGACGGCGACGACGACGACGGTGGCAGCGCCAATCACTCGCTTAGTAAATGCTTGGTGCATTTGCCGCGGAGATGGTGCTCCGACAATTTAAGGAATTTTCTTAGCGAGAAGGGTATAGCTTTTAAGCATGCTAAGAAGAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAGTTGAAGAGTTCGTCGAAGGAATTAGAAGGAAAATCAGCTGGCACCAAAACCATAAAGGTTGCTGATGTTCTTCCTCGGTCATTTGAAAAGAAAAGTAATGCCAGTGTTGCATCCCGTAAAGAATTAGATGAGGAGAATGCAGGGGATGATGTTGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAACCACTCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCATTCCTCTTCCTGAGTGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCTCCAAATGTAAATGGATACCGGAACAAGTGTGAATTTTCTGTTGGATATTCTCTGGAAGCCAAAGTGACGGTAGGCTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAATTGCTTGCAAATATGCTACAATCTTTCAGGAATTCCTACAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAACAAATGGGAATGTTGTTGATGCTGAAACTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAATTCAAGAGGCTTGCTCAGGCATTTGTTGCTGGAGCTACTTCGCATTGTCCAACATTACCCCTTACAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGTCGCCAGCTGATGCACCACTGCATTCGCTTCCCATTTCTATAACAGCTGGTGATCCTGAGATGGATGAAAATAATAATGCCAAGGATGTAAGAATCCATGATTATATCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTATTCACTTGCTGGAGATTGGGCATGCCTAGGTCCTGACACGCTGCTATTTGATATATGCTGTGGGACAGGGACAATTGGCCTAACATTAGCACATAAAGTCGGTATGGTGATTGGAATTGAAATGAATGCATCTGCTGTATCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACGTTAGATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTGAATGTGACAAAGGAACAAGTTGATGATCCTAATATCTCTGGAAGTGGCAATGACATTCCCAGGGATAGTGCCTGCCCCGAACCTGAAAATGGTGAAATAGCATCTAATTGTCCAGAAAATAACAATGCAGAAGTTGGAGGTGGGGTTCAGAAGGGTAGTGCTTCTGAAAATGGGAATACTTCCATGCAACAGTTCAAAAATGTCGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCACCCAACTGTGATCAAAGCTTTGAGAACTCATCAAGGCTTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCGATGAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTAGTCTAGCGCGGCACAGGGCGAAGTCTATGCCAATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2451 0.4565 MAEPLSNTELSPSETLCPTNGHDSTSEPHPTAPEHTQLNPEDDVVLTAKRKRDDDDEKDRSVHPLWKTSLCSYFRSHNGSCSHGATCRYAHGEEELRLRPDNTWDPTSEHAKKVLKTETDEKRAVSEEVMMTEAVVDSDGDDDDGGSANHSLSKCLVHLPRRWCSDNLRNFLSEKGIAFKHAKKKKGMMIGFVTFEDEEQLKSSSKELEGKSAGTKTIKVADVLPRSFEKKSNASVASRKELDEENAGDDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKKTTLMQILKKLTRNARKACPNGIPLPEWILKSREIGGLPCKLEGIIASPNVNGYRNKCEFSVGYSLEAKVTVGFMLGNFREGVTAVEEAVDCPNVSTIACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNVVDAETFGGIAEVMLIVQVSTASFDDAKVAAEFKRLAQAFVAGATSHCPTLPLTALVVQDHQGISNVSPADAPLHSLPISITAGDPEMDENNNAKDVRIHDYINNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHKVGMVIGIEMNASAVSDAHRNAEINGIKNVRFICSKAEDVMGSLLREYLNVTKEQVDDPNISGSGNDIPRDSACPEPENGEIASNCPENNNAEVGGGVQKGSASENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHQGLRRLVYISCNPETLVANAIELCTPSPMKIEKGNKDNRGWRNMSSASLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0516 816 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 816 IPR045850 -
Aed5g0516 816 MobiDBLite consensus disorder prediction 255 270 - -
Aed5g0516 816 CDD RRM_SF 155 220 - -
Aed5g0516 816 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 275 816 IPR010280 GO:0006396|GO:0008173
Aed5g0516 816 Pfam tRNA (Uracil-5-)-methyltransferase 700 751 IPR010280 GO:0006396|GO:0008173
Aed5g0516 816 MobiDBLite consensus disorder prediction 1 33 - -
Aed5g0516 816 CDD AdoMet_MTases 575 629 - -
Aed5g0516 816 MobiDBLite consensus disorder prediction 233 270 - -
Aed5g0516 816 MobiDBLite consensus disorder prediction 672 697 - -
Aed5g0516 816 MobiDBLite consensus disorder prediction 44 61 - -
Aed5g0516 816 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Aed5g0516 816 Coils Coil 285 305 - -
Aed5g0516 816 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 277 816 IPR029063 -
Aed5g0516 816 Gene3D Vaccinia Virus protein VP39 513 815 IPR029063 -
Aed5g0516 816 SUPERFAMILY CCCH zinc finger 63 98 IPR036855 GO:0046872
Aed5g0516 816 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 93 IPR000571 GO:0046872
Aed5g0516 816 Gene3D - 59 98 - -
Aed5g0516 816 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Aed5g0516 816 MobiDBLite consensus disorder prediction 645 697 - -
Aed5g0516 816 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 81 816 - -
Aed5g0516 816 Pfam Methyltransferase domain 573 631 IPR025714 -
Aed5g0516 816 MobiDBLite consensus disorder prediction 1 61 - -
Aed5g0516 816 MobiDBLite consensus disorder prediction 233 247 - -
Aed5g0516 816 ProSitePatterns RNA methyltransferase trmA family signature 1. 711 743 IPR030390 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed5g0516 tRNA_U5-meth_tr 1.7e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0516 K15332 - gmx:100777601 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0516 5 3718074 3722930 Aed5g0516 5 3718074 3722930 ECH