Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0508 ATGGCTTCCTCAAACAACACTACCAAATCTGAAAAGAAAAAAACCAAAAACGCAGAAATCTCTAAAACCGATGGCAAAACGAAGAAGAACAGAGAAATCTCAAAAGAGGAGCACAAGAAGAAGACGAAGAAGCCCAAGCTTAGCAACGGCACTTCAAAACAGCGAGACGAGGGAGCAGAACGAAGCGGAGAAGAGGCGAAAATGAACGTGTTTCCTATGAATCGTATCAGAACGATTATTAAGGGCGAAGATCCCGATTCGCGTGTTTCTCAGGAAGCATTGCTTGCCATCAACAACGCTTTGGAGAAGTTCCTTGAGCAATTCACGCAGGACGCTTATGCTTTTTGCGTTCAGGACCGCAAAAAATGCCTCAGCTACGATCACCTAGCACATGTTGTTAGTAAGCAGAGGAGATATGACTTTCTCTCTGATTTTGTTCCTGAGAAAGTAAAAGCAGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGCAAAGGAGGATGTTTGAAAATGTAA 513 0.4347 MASSNNTTKSEKKKTKNAEISKTDGKTKKNREISKEEHKKKTKKPKLSNGTSKQRDEGAERSGEEAKMNVFPMNRIRTIIKGEDPDSRVSQEALLAINNALEKFLEQFTQDAYAFCVQDRKKCLSYDHLAHVVSKQRRYDFLSDFVPEKVKAEDALRERSAAGKGGCLKM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0508 170 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 163 - -
Aed5g0508 170 SUPERFAMILY Histone-fold 70 149 IPR009072 GO:0046982
Aed5g0508 170 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 5 163 - -
Aed5g0508 170 MobiDBLite consensus disorder prediction 9 39 - -
Aed5g0508 170 MobiDBLite consensus disorder prediction 1 69 - -
Aed5g0508 170 MobiDBLite consensus disorder prediction 49 64 - -
Aed5g0508 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 71 133 IPR003958 -
Aed5g0508 170 Gene3D Histone, subunit A 2 148 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0508 51 129 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.772 1.85e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed5g0508 CBFD_NFYB_HMF 1.8e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0508 - K03506 gmx:100793738 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0508 5 3671412 3673269 Aed5g0508 5 3671412 3673269 ECH