Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0493 ATGTCACCGAAGTCCCTGATGGCGACGAACCGTTTCTTGTGTGAAATATGCAACAAGGGTTTTCAGAGGGACCAGAATTTGCAGCTTCATAGGCGTGGACATAACCTTCCGTGGAAGCTGAAGCAGAGAGCAAACAAAGATGAAGTGAGGAAGAAGGTGTACGTGTGCCCTGAGAAGAGTTGTGTGCACCATGACCCATCTAGAGCCTTGGGAGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATACCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCTTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGGTAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAATGATCATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCACATTTTTTCTGGGTTTCACTCATCAGTACTAGATCAATTCGGTGGCTGCGCCTCATTATCAGAACCAAAAATGGCGAATTATGCTGACGCAAACCATCATCATCAACAAAAGCTTCCACTATGGCTAGATCATCCTCATCCTCAAACTCTTAACAACTTCCCAACAAAACTACTACCAAGTGGTTTCACTACTACTACCACTACTTCATCAGGTTCAGGACCAAACTCTGTGGCTGATCTAGTACAAACGAATACGATGGACATGTTTGGGCCACAACAGTTTGTGAATTACCGTTACCCAGAAGCATCATCATTTGGAGGTGGCAATGCCAACCTGTCTGTGCTACCGCTACCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGTGGACTTGTCGCATAGCGGAGCCTCTAATAACTTGTACTTGAGTAGTAATAATAGTAATAGTAATAATCAGAACCCACCTCAATATCACTACATGCCAGCCACCACACTGTTGCAGAAAGCGGTTCAAATGGGATCTACGAGGCTCAATCACGACAACAACAACAACGCGTTTGGCTCCATCATGACTACCAGCAACAGCAACAGAAACAACAACAACAACAACGTTGTTGTTGAGGTTCAGAAGCTGAACGAGTTGGTGAGTACTGTGGAAGAAGCTGGGTGCACCGACAACCTTGGAGGTGGGTATTTATTGAATGATTCAAACAATAACTCGTTTGCGGTTGTGAATGGAGCCAAGGGTGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACACAACAACAAGCATCAATTGTGGGGAAGCAACTACTACTACACTCACTAAGCTCATCAAATAACAAAAGTCAACTTGGTTTAACCAGAGACTTCTTGGGTGTTGGAGATCGTAATAATAACAACAACATTGACTCTATAAGAAGGAGACCCTTCTTTCAGCAACAAGACCAGCTTGTTGAATTTAATGCAATGGAGTCTGCCTCAGCCATGAACCTGCAGAACCAGTACGGTGGACACTACTGTTAG 1560 0.4487 MSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDEVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTTVPAALSNLRNDHHHLTNAQASRIPHIFSGFHSSVLDQFGGCASLSEPKMANYADANHHHQQKLPLWLDHPHPQTLNNFPTKLLPSGFTTTTTTSSGSGPNSVADLVQTNTMDMFGPQQFVNYRYPEASSFGGGNANLSVLPLPPHGLKQEQEENKVDLSHSGASNNLYLSSNNSNSNNQNPPQYHYMPATTLLQKAVQMGSTRLNHDNNNNAFGSIMTTSNSNRNNNNNNVVVEVQKLNELVSTVEEAGCTDNLGGGYLLNDSNNNSFAVVNGAKGGLEHMVMPVDEETQQQASIVGKQLLLHSLSSSNNKSQLGLTRDFLGVGDRNNNNNIDSIRRRPFFQQQDQLVEFNAMESASAMNLQNQYGGHYC 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0493 519 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Aed5g0493 519 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 479 - -
Aed5g0493 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Aed5g0493 519 SMART c2h2final6 54 84 IPR013087 -
Aed5g0493 519 SMART c2h2final6 12 34 IPR013087 -
Aed5g0493 519 SMART c2h2final6 89 109 IPR013087 -
Aed5g0493 519 SUPERFAMILY beta-beta-alpha zinc fingers 11 109 IPR036236 -
Aed5g0493 519 Gene3D Classic Zinc Finger 46 137 - -
Aed5g0493 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0493 Aed-Chr5 3610001 3611750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0493 1 159 IDZ Gene Family AT3G45260 83.648 1.36e-100 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0493 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0493 5 3610001 3611750 Aed5g0493 5 3610001 3611750 ECH
Aed1g1139 1 11145006 11146454 Aed5g0493 5 3610001 3611750 PCT