Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0490 ATGGCACACCCTACTCCTACTCACAACATTGTCATTGACATCACGGCGGGGAGTTCCGGCGCCAATGATGATGTCGGTGCTTTGAATTCTAGGATCATCGATACACCACGTAGGCTGATTAATCCGAGGACGAGGTTGTTATGGATATGGATATGTGTGGAGCTAGTGTTCACTGTGTGCCAGATTGTTGCGTCTGTTGTTGTTCTGTCTTTGTGTTCGTCAAAGCATGATGATGAGATCTCGCGTGGACCAGAGTTTATTTGGGTGGCTGTGTATGCATCAGGCTGTGTTGCTACCTTCCCTCTTCTCTATTGCCGTTATTATCGAAATCATAACAACAACAACCCTCTGAGCCTGAGATTGGAGCGACTTGTTGAAAAATTCAAAATTGGTGTATGTTACTTTTTTTTTATCTGGTTTGCTGTTGGAATTATTGTATGGATTGATGGAGGACTATCATCTGCTCATGAAGATCCTAGCTTGCACAGGTTATTTTTAGTGTTTCTTGCTTCTATGTATATCCGTTTTGCTTTTGGGGTTATAGAGGATGTTGCAGCAACACAAATCCAATGTGCAAGTGCAACCCCTGAATTGATTAATTCTCTGCCGACTTATAACTTCAAAGTGAATAACAAAATTGGTCAAGGTGGAGTTATTGCTGCAGGAACTCAAAGGGAGCGTATCATCTCTGCAGAAGATGCAGTTTGCTGCATCTGCTTGGCAAAGTATGAAAATAAGGATAAGCTAAGAGAATTGTTACCTTGTTCTCATCTTTTTCACAATGACTGTGTGGACAAGTGGCTGAAGATGAAGGCTCTATGCCCCCTTTGCAAGAGTAAGGTTGGTGAGATTAATGTTACTGCAGAAACAGTCGATGCATGCCAACCAACAACATCACGGTTTGAGAATGGCTTCACCAGCGCCACATCCTAA 933 0.4277 MAHPTPTHNIVIDITAGSSGANDDVGALNSRIIDTPRRLINPRTRLLWIWICVELVFTVCQIVASVVVLSLCSSKHDDEISRGPEFIWVAVYASGCVATFPLLYCRYYRNHNNNNPLSLRLERLVEKFKIGVCYFFFIWFAVGIIVWIDGGLSSAHEDPSLHRLFLVFLASMYIRFAFGVIEDVAATQIQCASATPELINSLPTYNFKVNNKIGQGGVIAAGTQRERIISAEDAVCCICLAKYENKDKLRELLPCSHLFHNDCVDKWLKMKALCPLCKSKVGEINVTAETVDACQPTTSRFENGFTSATS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0490 310 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 35 113 - -
Aed5g0490 310 ProSiteProfiles Zinc finger RING-type profile. 236 278 IPR001841 -
Aed5g0490 310 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 111 290 - -
Aed5g0490 310 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 111 290 - -
Aed5g0490 310 SUPERFAMILY RING/U-box 227 284 - -
Aed5g0490 310 Pfam Ring finger domain 236 278 IPR001841 -
Aed5g0490 310 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 35 113 - -
Aed5g0490 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 287 IPR013083 -
Aed5g0490 310 SMART ring_2 236 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0490 Aed-Chr5 3583240 3584444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0490 49 283 C3H Transcription Factor Family AT1G80400 37.338 7.12e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0490 - - gmx:100775815 238.039