Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0488 ATGGAAATTGATCTGAACCATGAAGCGACTGAGGTTGAGAAGAATGCATTCTGTGAGAAAGGTGTTGTTAGTGTTGCTTGCTGGTCCTCTTCCACTTGTTCATCCTCAAGTGCCTCTTCAGCTCGTGTTTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGCTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCATCTTTCTCTCCTTTCACACCATTGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACTCAAGTTACTTTGCTCCCTCAGGCTGAGTTGGAAGGGATACATTCAGATGGCAAAGAACTTGAGGAATTAGGAGCAGAAGAGGATTATAAGCAGCAGAGGCCCTCACAAGAGCTTGTTGCAAAAGACTTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTAATGTAATTAGAAAAACTAGGTGTGAGGTGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGATCTTCCCGAATCAGTTATTGGTAGCCAGAACTGCTATCCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATGAAGAATCCAGTGAGCATTGGAACAAGATTCAAAATGAGATTCGAAATGGACGAATCTCAAGAGAGAAGGTGTAGCAGTGGCACGTTGATGGGAACGAGTGATTTGGATCCTTATAGATGGCCCAAATCAAAATGGAGGTGCTTGATGGTACATCTTCAATTTTGCTTTGTTACTAATGCAGTACACTTCTACCATATTTATACGGTCAGATGGGATGAGGATATTGAGACGAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGCAGCACGAGGCAGTGGGATGATGGGCTTTGAGGGGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGACACAGTAACCAAGCCTCCTGGTTTTGAGATGAGCTCTCAAAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTACCTCTTCTGAGCTGAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCTTTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAGTCTAAGTTGCACAGCTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCAACCTTCATTGTTTCCTTATGGGGATATTCACCAAGCTGGTCAAGCTAGCTTGTTTTGCTCAAAACCCACCACTTTCCAGAGAGAGAATGTCCCATTTAACAAGCCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGAAGATCAGATCTCCCAAATGAGCATAAGCTGCAGGATAATATTTCTGCTGCTGCTTCATTAGGGGCTGCAAATATGGGGGTTTCTAATGACAACAATGTCCAGGGAAAGGTTAATGCCTGCAAACTATTCGGGTTTTCTTTGTCTGGCGAAACTACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGAGTGAACTAGAGAGACTGTTTGGAATGGAAGGCCTTCTTAAAGATCCTGATAAGGGATGGAGAATTCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGACCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATACACCCAAGAAGAAGTGGAAAAGATGACAATTGGGATGACCAGTGATGATACTCATAGCTGTTTGGAAGAGGCTCCAGTGATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTATTCTCCAACGGCAGTTAGAGTCTAA 2208 0.4407 MEIDLNHEATEVEKNAFCEKGVVSVACWSSSTCSSSSASSARVSSSYLELWHACAGPLTSLPKKGNVVLYFPQGHLEQVASFSPFTPLEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGIHSDGKELEELGAEEDYKQQRPSQELVAKDLHGVEWKFRHIYRGNVIRKTRCEVGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAISTKSKFHVFYSPRASHADFVVPYQKYVKSMKNPVSIGTRFKMRFEMDESQERRCSSGTLMGTSDLDPYRWPKSKWRCLMVHLQFCFVTNAVHFYHIYTVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTAARGSGMMGFEGSVRSPKVLQGQENAGFVSLYYGCDTVTKPPGFEMSSQSHPNLGSAEVRKVTSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPSLSCTAFNLHQATKPNFQPSLFPYGDIHQAGQASLFCSKPTTFQRENVPFNKPSTQAGIIVNEVGRSDLPNEHKLQDNISAAASLGAANMGVSNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMTSDDTHSCLEEAPVIMEASKSSSVGQPDYSPTAVRV 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0488 735 SUPERFAMILY CAD & PB1 domains 610 686 - -
Aed5g0488 735 ProSiteProfiles PB1 domain profile. 607 691 IPR000270 GO:0005515
Aed5g0488 735 PANTHER AUXIN RESPONSE FACTOR 18 146 - -
Aed5g0488 735 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 186 722 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed5g0488 735 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 146 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed5g0488 735 Pfam Auxin response factor 223 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed5g0488 735 PANTHER AUXIN RESPONSE FACTOR 147 179 - -
Aed5g0488 735 Gene3D - 122 184 IPR015300 -
Aed5g0488 735 SUPERFAMILY DNA-binding pseudobarrel domain 147 183 IPR015300 -
Aed5g0488 735 Gene3D - 603 696 - -
Aed5g0488 735 PANTHER AUXIN RESPONSE FACTOR 186 722 - -
Aed5g0488 735 Gene3D - 260 350 - -
Aed5g0488 735 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 147 179 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0488 Aed-Chr5 3565726 3573946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0488 43 735 B3 DNA Binding Superfamily AT5G60450 50.448 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0488 - - gmx:100783513 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0488 5 3565726 3573946 Aed5g0488 5 3565726 3573946 ECH
Aed1g1146 1 11191457 11196684 Aed5g0488 5 3565726 3573946 PCT