Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0485 ATGGATTTGGTACCGAGCGTTAAGGAAAAATTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGTTACAAAAATGTGGGCCAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCATCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATATGAAGATTCCTTTCAACCAGATGTAAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTACAGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAGCTCTGTCGTCTCACTCGTGCAGACCCATTTTGGGTTTCAGTGGCACACCCTTTGCATCCTGTGAAGTTGATCACAACCAGTATTCCAACTGATGGAAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTTACTAGAGCAGACAAGGATTTGGTATCAAAACCAGAATTTGAAGTTGAGGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGGTGTTCCAGTTCGTGCAACTAACAGACCTGGCTCACAGATGCTTGGGGCTAATGGTCGGGATGATGGTCCAATTATCACGCAATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGAAGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGCGTGCCACAGATCCTAAACATAATTCCGAAGGAGTCTGATGGCGAGAAATTTGATGACACTCTTGCGCGTGTCTGCCGTTGTGTTGGGGGTGGAAATGCAACTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACCATCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCCTGTATTCACATGGGTTGCTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTTAAAAACTATGCTTTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCCATGATGATGAATTGTGGTGAAGAAATTACTGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCTGGAATTAGGGAATCTAGCACACTGGCATCTTCCTGATGGAACCCTGTGTGTTTCAACTGATGATGTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTGTTTCAGACAGTCCTGCTGGTTTAAAACTTGGCATCAGGAAGAATCGAAACGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGTTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACTATTCCACTACAAATGAGATTGAGATGGATTCTTTGTGTCTCAATAATGTTGATTTAGCATATGAATATCCTGCACCCAACACTTCTGCTCAGGTAGGTGGTGCAGAACTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTTTTGGCATCTCCTGCAATTCCATATAAGAACAACCAAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATACTGAAGATCATAATCTTGGTGGAAGTTCATGCTTAGGACTCTTTCCTAATGATGATGATTTTGGGATGTCTTCCTTGTGGTCATTGCCTTCTGGAAGTCAGGCTGGTCCCGGATTCCAATTATTTGGTTCTGATGCAGAGGTGTCAGATGCATTGGTCCATCTGCACCATGGTCCTATGAATTGCTCTCCGTCACTAAATGGTTATGCATTGGCTACTGATACTGCTTTGGGACATGGTAGTATTTTGCAAGATCCCTCTGCTGGTCGGTTGGATGCTGATTTGAATGGTTTGGTGGACAATCCATTGGCATTCGGAGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCAGAATGAGTCGAGAGATCAGGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAACAATGGTGATGCTTCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCAACCAGAGAAGGTGCCATGAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGATCTGACAGGGCAAGAAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCAGAGTAA 2634 0.4298 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVTKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKSEYEDSFQPDVKIRCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLTRADPFWVSVAHPLHPVKLITTSIPTDGNNPVQSVERTFQLTRADKDLVSKPEFEVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQMLGANGRDDGPIITQYTKDGINKISLTGSDARIFCLGVRIVKRRSVPQILNIIPKESDGEKFDDTLARVCRCVGGGNATDDADSDSDLEVVSDTFTINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEITEVEVKPDGSWRVKVKSESERLELGNLAHWHLPDGTLCVSTDDVKRVDTLKQVKQEGVSDSPAGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNEIEMDSLCLNNVDLAYEYPAPNTSAQVGGAELIVLSDSEEDNDLLASPAIPYKNNQNDATDGYSVPPPVIVDSYTEDHNLGGSSCLGLFPNDDDFGMSSLWSLPSGSQAGPGFQLFGSDAEVSDALVHLHHGPMNCSPSLNGYALATDTALGHGSILQDPSAGRLDADLNGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNESRDQANVANGVCTEEDWISLSLGGGAGGNNGDASTQNGLNSRHQIPTREGAMNTLDDTASLLLGMNDVRSDRARRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0485 877 MobiDBLite consensus disorder prediction 801 825 - -
Aed5g0485 877 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Aed5g0485 877 MobiDBLite consensus disorder prediction 841 855 - -
Aed5g0485 877 MobiDBLite consensus disorder prediction 841 877 - -
Aed5g0485 877 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Aed5g0485 877 Gene3D SAP domain 3 58 IPR036361 -
Aed5g0485 877 MobiDBLite consensus disorder prediction 796 825 - -
Aed5g0485 877 Pfam SAP domain 12 42 IPR003034 -
Aed5g0485 877 SMART PHD_3 114 166 IPR001965 -
Aed5g0485 877 Pfam PHD-finger 114 166 IPR019787 -
Aed5g0485 877 MobiDBLite consensus disorder prediction 513 529 - -
Aed5g0485 877 SUPERFAMILY FYVE/PHD zinc finger 105 169 IPR011011 -
Aed5g0485 877 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Aed5g0485 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Aed5g0485 877 SUPERFAMILY SAP domain 1 59 IPR036361 -
Aed5g0485 877 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 824 - -
Aed5g0485 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Aed5g0485 877 MobiDBLite consensus disorder prediction 512 531 - -
Aed5g0485 877 SMART sap_9 11 45 IPR003034 -
Aed5g0485 877 MobiDBLite consensus disorder prediction 540 564 - -
Aed5g0485 877 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Aed5g0485 877 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Aed5g0485 877 PANTHER SAP DOMAIN-CONTAINING PROTEIN-RELATED 9 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0485 Aed-Chr5 3534732 3546244 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed5g0485 PHD 2.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0485 - - gmx:100793735 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0485 5 3534732 3546244 Aed5g0485 5 3534732 3546244 ECH
Aed1g1147 1 11206887 11216632 Aed5g0485 5 3534732 3546244 PCT