Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0478 ATGGACTTCTCCGAAGACTTGCACTGTCTCTTATCGGAGCAACACCGCGAACTCGCCGCCGCGGAGGTCATGGACTCCGACCTCGACTTCGCCTTCCGCCTCCAGTTACAGGAGGCCCTCGCGGCCTCCCTCGCCGCCCAACCATCCTCCGCCGCCGCCGCCGTTGCGGTCTTCGAAGAAACCGTCATCGTCGACGACAATGCTCTGAACTCGACGGCTCTTCAGCGCGAGGAGCTGGTGCGTCTGGAGCGCGAGATTATGGACCGGGAAGAGAGCGAGAGGGAGATGAGAAAAACGAGAGAGGATCTCTGCCGTCGGATCCACGACGAGGAGGTGGCGAGGGAGATTTCGTCGATTTCCGAGGCGGAGTGGCAGCAGTGGGGCGACAACTTCGAGAAACCGTTCGGCGAGGGCTCTTCCTCGTCCGAGGGGAGAGATGAAGGCGTTGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGCCAGAAGGTCTTTTTGTCTGGGATTGGAGTTGCGATTTGTGACCTTAGCGATAATCTGATATTCGAGGTTTCTAAGTCGCTCCCGCTCCCTGAGAATGGAACTAGCAAGGCCGCTGCGGAGATTATGGCTTTGATTGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATGTTGGTTGATCAAGTGAATCTGCTTCAAACGAAGTTTTCATTCTGCAATCCAAGGTTTGTGGCCAGACATGATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCTATTGTGTCTGTGTCCACGAGGCCTGCGGAATCTGGGGGTAGCAGGAGTTTGAATGAAACTTGTGTTATATGTTTGGAGGAAACTGATGCCAGTCAGATTTTTTCGGTTGATGGCTGTCAACACCGCTATTGCTTCTCGTGCATGAAACAACATGTGGAGGCGAAGTTACTTCTTGGAATGGTGCCAAAGTGCCCTCATGACGGCTGCAAGTATGAGCTTCTAGTTGACAACTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCGGCAACGAAAATTGGAAGCTTCAATTCCCGTTGCTGAAAAAATTTATTGCCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTCTTACAGTACTCAAGAGATCTTATCGGTCAATCTGAACAATCGGGACCCAAGAAATGCCTAAAATGTCATGACCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTCTCTGGCATCAAGGAGCCTATGGCGGCAGTGTGTGAAGTGTAGCCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTATGAATTTTGCTATAACTGTGGAGGTGAGTGGAAGGACAAAAAAGCATCATGTGCTTGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCATGAGGGAGAGTTGGAAGGAGATGATGATGATGAAGATGATGATTATAACTCTGATTCTGATGGTTATTATTAA 1620 0.4895 MDFSEDLHCLLSEQHRELAAAEVMDSDLDFAFRLQLQEALAASLAAQPSSAAAAVAVFEETVIVDDNALNSTALQREELVRLEREIMDREESEREMRKTREDLCRRIHDEEVAREISSISEAEWQQWGDNFEKPFGEGSSSSEGRDEGVVRVYFKGLVSEENVRGQKVFLSGIGVAICDLSDNLIFEVSKSLPLPENGTSKAAAEIMALIEAFNAAIALDLKRVSGKWPAKQRKIAMLVDQVNLLQTKFSFCNPRFVARHDVKFAFKLARDAIVSVSTRPAESGGSRSLNETCVICLEETDASQIFSVDGCQHRYCFSCMKQHVEAKLLLGMVPKCPHDGCKYELLVDNCQKFLTQKLTETMRQRKLEASIPVAEKIYCPYPRCSALMSKTEVLQYSRDLIGQSEQSGPKKCLKCHDLFCFNCKVPWHSGMTCYTYKRMNPNPPAEDLKLKSLASRSLWRQCVKCSHMIELAEGCYHMTCRCGYEFCYNCGGEWKDKKASCACPLWAEDNIWLDDHEGELEGDDDDEDDDYNSDSDGYY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0478 539 Gene3D - 430 534 - -
Aed5g0478 539 SUPERFAMILY RING/U-box 447 510 - -
Aed5g0478 539 SMART ibrneu5 446 503 IPR002867 -
Aed5g0478 539 SMART ibrneu5 360 433 IPR002867 -
Aed5g0478 539 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 514 IPR031127 GO:0004842|GO:0016567
Aed5g0478 539 ProSiteProfiles TRIAD supradomain profile. 289 513 IPR044066 -
Aed5g0478 539 Pfam IBR domain, a half RING-finger domain 365 433 IPR002867 -
Aed5g0478 539 Pfam IBR domain, a half RING-finger domain 447 501 IPR002867 -
Aed5g0478 539 MobiDBLite consensus disorder prediction 516 539 - -
Aed5g0478 539 Gene3D - 150 277 IPR036397 GO:0003676
Aed5g0478 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 373 IPR013083 -
Aed5g0478 539 Coils Coil 79 102 - -
Aed5g0478 539 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 514 - -
Aed5g0478 539 ProSitePatterns Zinc finger RING-type signature. 311 320 IPR017907 -
Aed5g0478 539 ProSiteProfiles Zinc finger RING-type profile. 293 339 IPR001841 -
Aed5g0478 539 SUPERFAMILY RING/U-box 291 372 - -
Aed5g0478 539 Pfam Reverse transcriptase-like 170 272 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0478 Aed-Chr5 3484101 3488046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0478 151 492 C3H Transcription Factor Family AT2G19610 33.240 1.59e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0478 - - gmx:100790037 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0478 5 3484101 3488046 Aed5g0478 5 3484101 3488046 ECH