Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0477 ATGGAGAGCAGTGACACATATACCCCTAGTTCCTCTGCCCCACTTTCTCACTCTCCAACTTCCTCTTCTTCATCACCACCTCCAATTCCCACTGTTGTGATGAGTCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTGTTGGCTCCTTATTTCCCTCCAACTGAACCTGCCAAGTTTACCATTGCACACCGTGTATTTGGTGCCAGCAACATCATCAAGTTCCTTCAGGAGCTTCCAGAGACTCAGAGGGCTGATGCAGTGACCAGCATGGTGTATGAGGCAAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAACAGGTCAATGAACTTCAAGCACAATTGGCCAAGTCACAAGCTGAACTTGTGAACATGCAACTTCAGCAGGCCAATCTTGTGGCTCTGATTTGCATGGAAATGGCACAGAGTCCACAGGATCAATCACCACAACAATCAGTGGATAACTTCATTTCAACTCCACCACACACTGGTGGCATGAACTTCTTTGAGGACAACAACACCAGCCTTAACTCACTATGGGAACAGACCCTTTGGACATGA 603 0.471 MESSDTYTPSSSAPLSHSPTSSSSSPPPIPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPETQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVNMQLQQANLVALICMEMAQSPQDQSPQQSVDNFISTPPHTGGMNFFEDNNTSLNSLWEQTLWT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0477 200 Coils Coil 115 142 - -
Aed5g0477 200 MobiDBLite consensus disorder prediction 1 20 - -
Aed5g0477 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 196 - -
Aed5g0477 200 MobiDBLite consensus disorder prediction 1 28 - -
Aed5g0477 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 24 196 - -
Aed5g0477 200 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Aed5g0477 200 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0477 Aed-Chr5 3475225 3476970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0477 32 200 AS2 family AT1G07900 67.647 3.00e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed5g0477 LOB 3.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0477 - - gmx:100789504 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0477 5 3475225 3476970 Aed5g0477 5 3475225 3476970 ECH
Aed1g1151 1 11236567 11238374 Aed5g0477 5 3475225 3476970 ECH
Aed1g1151 1 11236567 11238374 Aed5g0477 5 3475225 3476970 PCT