Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0466 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGTTTAGTAACGGCGACTCGCCGTTACCGTTAGAGAAGTTTCCAGAAGGTTCGAGGAACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCGAGTAACGTCGGCGGTGACGAGGACTCTTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAGGCCGCGAACGACGTCGTAACGAGGGAGCTCTTCCCGGTAGGTGGAGGAATGGCCACGACGTCGTTTTCAGCTAGGAATAGTTTTGTGGATCTCTCGTTCGATCGCAAGGGAGGGAACAGTGAGATGAAGATGCTTCAGACTCAGACTCAGACTTCGACGCAAACTCCGACTCCGACACCAACTCAGCAACCAGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGGGTTACTTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCCAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGACGAAGAATTTGTCCAAGGAGGAATTTGTACATATATTGCGTCGCCAAAGTACTGGTTTCTCAAGAGGAAGCTCTAAATACCGAGGAGTAACACTCCACAAATGTGGCCGGTGGGAAGCTCGAATGGGCCAACTACTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAACGGACGGGAAGCAGTGACCAACTTTGAGTCAAGTAGCAGTCAGAACCTTGATCTCAATTTGGGCATAGCGACCCCAGGACCTGTTCCCAAAGAAAATTGGGCGCAACTTCAGTTCCCTTCCATCCCTTACAACACACATGGTGGAAGAAGTTCAATGATAGAAACCAATTTTAATTCTGGAATTGGTAATCCATCTTTGGAAAGGATGGTTGTAACTGAAGATCGTCCTTTAGTATGGAATGGCATGTCTCCTAATTTCTTTCCCAATGAGGAGAGAATCGGCATTGATCCTTCAAAAGGACTCCCCAACTGGGCGTGGCAAACACATGGCCAGGTCAATGCTACTCCAGTACCAACGTTCTCTGCTGCAGCATCATCAGGATTCTCCTTTTCAGCTACCTTTCCTTCGACTGCCATCTTTCCAACAAGATCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCACGCCTACCAGCAATGCATCTGAATACTATTACCAGGTTAAGCCCCCGCAGGCACCACCATAG 1380 0.4812 MLDLNLNAEWTDSFSNGDSPLPLEKFPEGSRNQMAESGTSNSSVVNADGSSNVGGDEDSCSTRADDVYTFNFDILKVEAANDVVTRELFPVGGGMATTSFSARNSFVDLSFDRKGGNSEMKMLQTQTQTSTQTPTPTPTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFESSSSQNLDLNLGIATPGPVPKENWAQLQFPSIPYNTHGGRSSMIETNFNSGIGNPSLERMVVTEDRPLVWNGMSPNFFPNEERIGIDPSKGLPNWAWQTHGQVNATPVPTFSAAASSGFSFSATFPSTAIFPTRSMNSIPQSLCFTSSSTPTSNASEYYYQVKPPQAPP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0466 459 MobiDBLite consensus disorder prediction 32 58 - -
Aed5g0466 459 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Aed5g0466 459 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 425 - -
Aed5g0466 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 425 - -
Aed5g0466 459 MobiDBLite consensus disorder prediction 17 59 - -
Aed5g0466 459 CDD AP2 247 292 IPR001471 GO:0003700|GO:0006355
Aed5g0466 459 Gene3D AP2/ERF domain 247 291 IPR036955 GO:0003700|GO:0006355
Aed5g0466 459 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Aed5g0466 459 CDD AP2 156 214 IPR001471 GO:0003700|GO:0006355
Aed5g0466 459 SUPERFAMILY DNA-binding domain 247 291 IPR016177 GO:0003677
Aed5g0466 459 MobiDBLite consensus disorder prediction 123 157 - -
Aed5g0466 459 MobiDBLite consensus disorder prediction 123 145 - -
Aed5g0466 459 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Aed5g0466 459 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Aed5g0466 459 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Aed5g0466 459 SMART rav1_2 248 296 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0466 Aed-Chr5 3361096 3365922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0466 1 459 AP2-EREBP Transcription Factor Family AT5G60120 44.578 3.38e-103 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g0466 AP2 6.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0466 K09284 - gmx:100788303 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0466 5 3361096 3365922 Aed5g0466 5 3361096 3365922 ECH
Aed1g1161 1 11326781 11331395 Aed5g0466 5 3361096 3365922 ECH