Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0461 ATGCCTATTTTGTCTGGAATAGGTCTTCTGTACAAGATCATGAGCCACAAAACTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGTGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTCAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTCATGATATTCTATCCTATGGATCTATCATTCATCAACTTAAAACATTAAATTCATTCTTCAATAATCAATGCCATTCCTCAACTTGGATTAACACACTTCCTCAGTCTAGTGGTAGTGGGAGTGGGAGTGAAAGTGCGACCCACAACAGAAAATCTGCAAAGTCAAAAAGTAATGATGCATATGAAAAAAATAGTGACAGCAGTGATGAGAATGACTACAGAAGCAGAGGCTTGAGTGTTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCACGTGTGCCCAAGTGATGCAAACAAAGACTGAAAAAGTTAGTAGTAGATGGGTGCACGCTACAGAAAAAGAGTGCCATAAACTTATTGATCATCTTGATGATGTTGCAATGGGTAAGGACTTGGCTATGGGAATATCTTTGAACATGCAACTAGAGCATCCACTTGAGGAACAGTCTAGCAATCCAATGGTGGGTAAAGGGGCAAATAAGATGTCTGATGCAGATGATATGCAGATCATTAAAGGACAGAATAATGTCTGTGAAAAAGGACAACTGCAATACAATGGTGATAAAACTGGGACACAGGAAAATCAGGCTATGAATGTCATCGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGTAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTTTCACAAACAAAAGCAAACTGTTGCCCCAAAGAGCATCCATCCCTTGAACTTGCTTTGAAAAGACTGGGAGAAGTAAGAGATGCTATAAATGTCACAGGTGAGGAATGCAATGTCTTGAGACACTCAGATCAGTCAGCATTCTCAAAATATAATACTGCTACTTCTGCTAACCAGGTGATGTGCAAGTCCTTTGACGGCAAGAAACATTATATAGCTCAAACTGGAAATGTTGGAAGCTGTTCCCCACTAGACAATAGCTCAGCTGCACCAAATACAGAGACCATGCACAACTTCCCATCTCATTCAAATGGCACTCCTCCAAATCAACAATCTAATGGGAGCAACAACATCAATGATATGGCCTCTGTTAATACATATCTTGGCACCAAACCTGATACTTTCGACAAGAAGCCAGAGTCTGGAAGAGGGATTGGCTCGTTTAATTCTCATGAACTCCAAACTGTGCGTAACAATAGAATCTTGTCATCTCAGGAGAAAACTTCTGCCTGGGAAGAATATACAGAAATTGTTAAAGAATCAGTGGGAGGGTCTGAACAAGGATTCCAAGTTGAGCACACTCACTATCACCTTCACCATTATAATCACATTGCCCATAAAGCTGCAGTAGATCTCCTCCAATCAGATCATGATCTCTTACTGAAAAGCTCAACCAAAGATGCTCAGCAATGTGTATCATCAAATGCATTTGGATGGCCAGCAGAAAGTAATGCTGGAAACTATGGTGTGGATGGAAATACAGCGGAGAGTGATCATGGGAGCAATAATGGACAGGATGGAAGCAACACCTTGACAATCAGAACGATGAATGTGGAAAACGGCAATGTGGCTTCTAGGAGCATTGGAATTGGTGGCATTGATAAGAAAAGCTTTGGAAATGGGGCAGATGAAGGACGACTTTCATTGAGAGAGGCTGCCTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAGAGGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATTAGGGGACAATTTGTCAGACAGATAGTGTCTGAATCCAAAGAAGAAAAAGATAAACAAAGTGACAACCTGTGTCTGCCTCTAGCTTCTTGCTATCAGAGTAGCCCTAGGAAGGAGCTTTTTGAGGTTTGTGTTAGAGGAATCTGTGATTATAGGTAA 2157 0.4108 MPILSGIGLLYKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSHDILSYGSIIHQLKTLNSFFNNQCHSSTWINTLPQSSGSGSGSESATHNRKSAKSKSNDAYEKNSDSSDENDYRSRGLSVRDGSDNGSGTQSSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATEKECHKLIDHLDDVAMGKDLAMGISLNMQLEHPLEEQSSNPMVGKGANKMSDADDMQIIKGQNNVCEKGQLQYNGDKTGTQENQAMNVIDVTDSNSPQAESRDLNTPNGFSGFSQTKANCCPKEHPSLELALKRLGEVRDAINVTGEECNVLRHSDQSAFSKYNTATSANQVMCKSFDGKKHYIAQTGNVGSCSPLDNSSAAPNTETMHNFPSHSNGTPPNQQSNGSNNINDMASVNTYLGTKPDTFDKKPESGRGIGSFNSHELQTVRNNRILSSQEKTSAWEEYTEIVKESVGGSEQGFQVEHTHYHLHHYNHIAHKAAVDLLQSDHDLLLKSSTKDAQQCVSSNAFGWPAESNAGNYGVDGNTAESDHGSNNGQDGSNTLTIRTMNVENGNVASRSIGIGGIDKKSFGNGADEGRLSLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRQIVSESKEEKDKQSDNLCLPLASCYQSSPRKELFEVCVRGICDYR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0461 718 MobiDBLite consensus disorder prediction 119 149 - -
Aed5g0461 718 ProSiteProfiles Response regulatory domain profile. 1 65 IPR001789 GO:0000160
Aed5g0461 718 MobiDBLite consensus disorder prediction 402 445 - -
Aed5g0461 718 Pfam Response regulator receiver domain 1 59 IPR001789 GO:0000160
Aed5g0461 718 ProSiteProfiles CCT domain profile. 632 674 IPR010402 GO:0005515
Aed5g0461 718 PANTHER TWO-COMPONENT RESPONSE REGULATOR 107 667 IPR045279 GO:0009736
Aed5g0461 718 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 69 IPR045279 GO:0009736
Aed5g0461 718 Pfam CCT motif 632 674 IPR010402 GO:0005515
Aed5g0461 718 MobiDBLite consensus disorder prediction 570 592 - -
Aed5g0461 718 MobiDBLite consensus disorder prediction 105 163 - -
Aed5g0461 718 Gene3D - 1 87 - -
Aed5g0461 718 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 107 667 - -
Aed5g0461 718 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 1 69 - -
Aed5g0461 718 SUPERFAMILY CheY-like 1 70 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0461 Aed-Chr5 3307254 3318156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0461 22 677 Response Regulator Gene Family AT5G02810 35.059 4.57e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Aed5g0461 Response_reg 6.2e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0461 K12129 - gmx:100785796 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0461 5 3307254 3318156 Aed5g0461 5 3307254 3318156 ECH