Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0431 ATGGCTCCTAAAGTTGATAAGAAGAATGACCCAAAGGCACAGGCTTTGAAAACTGCTAAGGCAGTTAAGTCTGGTGCTATCGTTAAGAAGAAGGCGAAGAAGATCCGAACATCTGTGACTTTCCACAGGCCGAAGACATTGAAGACGGATAGGAAGCCCAAGTACCCTCGCATTAGTGCGCCACCAAGGAACAAGCTTGATCACTATCAGATCCTGAAGTACCCTCTCACCACTGAGTCTGCTATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACCTTCGTGCTGACAAGAAGAAGATCAAGGATGCTGTGAAGAAGATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTCAGATTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAA 456 0.4496 MAPKVDKKNDPKAQALKTAKAVKSGAIVKKKAKKIRTSVTFHRPKTLKTDRKPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0431 151 ProSitePatterns Ribosomal protein L23 signature. 129 144 IPR001014 -
Aed5g0431 151 Pfam Ribosomal protein L23, N-terminal domain 12 61 IPR005633 -
Aed5g0431 151 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 151 IPR013025 GO:0003735|GO:0005840|GO:0006412
Aed5g0431 151 MobiDBLite consensus disorder prediction 1 20 - -
Aed5g0431 151 MobiDBLite consensus disorder prediction 43 62 - -
Aed5g0431 151 Hamap 50S ribosomal protein L23 [rplW]. 71 151 IPR013025 GO:0003735|GO:0005840|GO:0006412
Aed5g0431 151 MobiDBLite consensus disorder prediction 43 57 - -
Aed5g0431 151 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 151 - -
Aed5g0431 151 TIGRFAM uL23_arch: ribosomal protein uL23 75 151 IPR019985 GO:0003735|GO:0005840|GO:0006412
Aed5g0431 151 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 68 144 IPR012678 GO:0003735|GO:0005840|GO:0006412
Aed5g0431 151 Pfam Ribosomal protein L23 71 133 IPR013025 GO:0003735|GO:0005840|GO:0006412
Aed5g0431 151 Gene3D - 32 151 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0431 Aed-Chr5 3032373 3033836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0431 34 151 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 93.220 1.08e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0431 K02893 - gmx:100779362 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0431 5 3032373 3033836 Aed5g0431 5 3032373 3033836 ECH
Aed1g1188 1 11522318 11523737 Aed5g0431 5 3032373 3033836 ECH
Aed1g1188 1 11522318 11523737 Aed5g0431 5 3032373 3033836 PCT