Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0430 ATGTCTTCATCTGATTCGGGGAAACACATTGACCCTGCATGGAAGCTAGAAGAAATAATCTCAGTTATAATAGTGTGTGTTATCTTCATTACACTGAGTGATTGCTCGGGCATGTTGAAGCGTGTGTTCTTTGGTAGAAACCAGGTTCAAAGGCGTCTTCTAGATGAGTCCATTATTCCCGAAGAAGAAGAAGACCCTTCTATGCAGCTTCAAAGCCGTGGATTGGAGTTCACTTTGGTGCAGTCTCTTCCCACGTTTCAGTTCGTGAAAAACGAGGGAGAACTGTTACAAGACAACAAGGCAATTAACAACGTGGTTGAGTGTGCGATTTGCCTCGGAGAGTTTGAGGAAGGGGAGTGGCTGAAACATCTTCCACACTGCACCCACAGCTTCCATGTTTCGTGCATTGACACGTGGTTTCAGTCTCATTCCAATTGTCCTCTTTGTAGAGCCTTTGTGCATCATCACTTGCTTCAGCCTTTGAGGAGGGAGGATTTTGAAAGGGTTCAATCCATTAATATTGGCTCTTGA 531 0.4463 MSSSDSGKHIDPAWKLEEIISVIIVCVIFITLSDCSGMLKRVFFGRNQVQRRLLDESIIPEEEEDPSMQLQSRGLEFTLVQSLPTFQFVKNEGELLQDNKAINNVVECAICLGEFEEGEWLKHLPHCTHSFHVSCIDTWFQSHSNCPLCRAFVHHHLLQPLRREDFERVQSINIGS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0430 176 SUPERFAMILY RING/U-box 107 156 - -
Aed5g0430 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 154 IPR044675 -
Aed5g0430 176 CDD RING-H2_EL5_like 107 150 - -
Aed5g0430 176 Pfam Ring finger domain 107 150 IPR001841 -
Aed5g0430 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 155 IPR013083 -
Aed5g0430 176 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Aed5g0430 176 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 154 - -
Aed5g0430 176 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0430 Aed-Chr5 3030743 3031273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0430 65 153 Rapid Response to Elicitors AT3G16720 46.237 7.21e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0430 - - gmx:121172630 233.802