Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0427 ATGGCGATTTCTAGAATTGCCGTTGGAAATCCTTCAGAGTTTGGCCAAGCTGATGCGCTCAAAGCTGCTCTTGCTGAGTTCATCTCAATGCTCATATTTGTCTTTGCAGGAGAAGGCTCTGGCATGGCATATAACAAACTCACAGACAATGGTTCAGGAACACCAGCTGGGGTTGTGGCAGCATCACTGTCTCATGCATTTGCTCTTTTTGTGGCGGTTTCTGTTGGTGCCAACATCTCAGGTGGACATGTTAACCCTGCTGTCACATTTGGTGCCTTTATTGGTGGCCACATATCCCTCCTCAGAGCCGTTTTGTACTGGATTGCTCAGTTGCTTGGCTCTGTAGAAACATCTGCGTTCTCATTGTCTCCAGGGGTGGGAGCTGCAAATGCACTTGTTTTTGAGATTGTAATGACTTTTGGTTTGGTTTACACAGTGTATGCTACTGCAGTGGACCCAAAGAAGGGCAACCTTGGGACAATTGCTCCAATTGCAATTGGTTTCATTGTTGGTGCAAACATCTTGGCAGGTGGTGCCTTTGATGGTGCATCCATGAACCCAGCAGTGTCTTTTGGGCCCGCTGTTGTTAGCGGGTCATGGGCTAACCACTGGGTCTACTGGGTTGGCCCATTAATTGGTTCGGCTATTGCTGCTGTTGTTTATGAGACTTTCTTCATCACCCCAAATTCTTATGAACAGCTACCCCTCACAGATTAG 717 0.4742 MAISRIAVGNPSEFGQADALKAALAEFISMLIFVFAGEGSGMAYNKLTDNGSGTPAGVVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHISLLRAVLYWIAQLLGSVETSAFSLSPGVGAANALVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSGSWANHWVYWVGPLIGSAIAAVVYETFFITPNSYEQLPLTD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0427 238 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 238 - -
Aed5g0427 238 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 PRINTS Major intrinsic protein family signature 134 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 PRINTS Major intrinsic protein family signature 167 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 PRINTS Major intrinsic protein family signature 204 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Aed5g0427 238 Gene3D Glycerol uptake facilitator protein. 4 237 IPR023271 -
Aed5g0427 238 SUPERFAMILY Aquaporin-like 18 230 IPR023271 -
Aed5g0427 238 CDD MIP 21 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 Pfam Major intrinsic protein 16 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0427 238 PANTHER AQUAPORIN-8 1 238 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0427 Aed-Chr5 3017558 3018632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0427 1 238 Major Intrinsic Protein MIP AT4G01470 73.705 2.88e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0427 K09873 - gmx:100777419 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0427 5 3017558 3018632 Aed5g0427 5 3017558 3018632 ECH
Aed1g1192 1 11560773 11562499 Aed5g0427 5 3017558 3018632 ECH
Aed1g1192 1 11560773 11562499 Aed5g0427 5 3017558 3018632 PCT