Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0425 ATGGTTGAGCAAGAAATAATCCGAAGGGGTCCTTGGACAGAAGAAGAGGACTACAAATTGGTGTATTGTGTGAACATGTTTGGAGATCGTAGATGGGACTTTATAGCGAAGGTTTCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGAAAGCTCACACCCCATGAAGAAAACTTCGTTATGGACCTTCATTCCAAATGGGGAAATAGAGATTGGAGAAGAGAGCTTTTATGACACTGGTGGATATGATGACATGATGGGCTTGATTATTGGTGGTGAAAAGGGTTACTCTATGGATGACATTTGGAAAGATATTGTTGTGTCAGAAGAACAGAACAACAACAATAATCTGCAACCTGTTGTGTATGAAGGACATAGTGAAGAGGGATGCAGTACAATGATTATGTCTTCTCCTCCATCATGGGGTCAGTACAACAACATTTCTTCTTCTTCTTCTTCTTCTCACCCCTTGTGGGTGATGGATGAAGGAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGATCACCAATGTTTTTCTTGCTATGAACAAGGGAACGCATTTCTAACTGGTTAA 591 0.4095 MVEQEIIRRGPWTEEEDYKLVYCVNMFGDRRWDFIAKVSGYGGLITSTLISNEESSHPMKKTSLWTFIPNGEIEIGEESFYDTGGYDDMMGLIIGGEKGYSMDDIWKDIVVSEEQNNNNNLQPVVYEGHSEEGCSTMIMSSPPSWGQYNNISSSSSSSHPLWVMDEGEESNKMLFPTLSDHQCFSCYEQGNAFLTG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0425 196 Gene3D - 3 66 - -
Aed5g0425 196 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 57 178 - -
Aed5g0425 196 CDD SANT 11 41 IPR001005 -
Aed5g0425 196 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 41 - -
Aed5g0425 196 SUPERFAMILY Homeodomain-like 6 38 IPR009057 -
Aed5g0425 196 Pfam Myb-like DNA-binding domain 9 39 IPR001005 -
Aed5g0425 196 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 57 178 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed5g0425 196 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 41 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed5g0425 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 40 IPR017930 -
Aed5g0425 196 ProSiteProfiles Myb-like domain profile. 4 37 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0425 Aed-Chr5 3011385 3012483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0425 4 58 MYB Transcription Factor Family AT5G59780 52.727 1.21e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed5g0425 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0425 K09422 - gmx:100780267 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0425 5 3011385 3012483 Aed5g0425 5 3011385 3012483 ECH
Aed5g0425 5 3011385 3012483 Aed1g1193 1 11562833 11564176 PCT