Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0419 ATGATCCCAAACTATCAATCAACCATTACAACTGCGTCACTCGTCGACGTTGCCACCAGATCGACCTCAATTCATCGTCGTCCAATTGCTCACCGTCGCCGCCAGCCAGCGGCGCATCTCTCTCTTTTGACGCCCTATATTCAGACGTTGGGAATGGGAAATGGGTTTTCTTCCTTTAATCTTCGATGGCAATTGCATGAATTGAAAGTTCACAGTTATGCGTATAATCAGTGCATTAGTGAGTCACAGTGCTCTTCTTTTCCCTTTACCTCGATTTCTATGCACATGCCACCATTCATCAACCAAGTTGTTTGTCACAGTTTTTTTGTTTTGTTCTGGGACAAAGGGCTAGCCTATGATACCAATGAACCGGTTCTTAGAGACACCTTTGGGCAACATGGTGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGGAAATCAAGAGGGTATGGATTTGTGCGTTTTGTTTCAGAAACTACTGCCACTATAGCTCGTAAAGAAATGAATGGCCAGATACTGGATGGGAGATGCATTCGGGTGAGTTATGCACACAAAGGGTAG 570 0.4368 MIPNYQSTITTASLVDVATRSTSIHRRPIAHRRRQPAAHLSLLTPYIQTLGMGNGFSSFNLRWQLHELKVHSYAYNQCISESQCSSFPFTSISMHMPPFINQVVCHSFFVLFWDKGLAYDTNEPVLRDTFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTATIARKEMNGQILDGRCIRVSYAHKG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0419 189 SMART rrm1_1 115 184 IPR000504 GO:0003723
Aed5g0419 189 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 99 188 - -
Aed5g0419 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Aed5g0419 189 SUPERFAMILY RNA-binding domain, RBD 115 188 IPR035979 GO:0003676
Aed5g0419 189 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 99 188 - -
Aed5g0419 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 182 IPR000504 GO:0003723
Aed5g0419 189 Gene3D - 111 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0419 Aed-Chr5 2968786 2972901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0419 112 188 Eukaryotic Initiation Factors Gene Family AT3G16380 37.662 6.14e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0419 K13195 - gmx:100306540 147.132