Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0416 ATGTCTGCTGCTCTGGATATGACTCTCGATGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGCTCCCGTGGCCGAACTGGACCCTCCGGATCCGGTGCCGGACCTGCTCGCCGCTTACCCAACCGCGCCGCCAACCGTGTCGCACCTTATGCCGCCGCTAAGGCGCCGGAGGCAACGTGGCAGCACGATTTATTTGCAGATCAGCATGTTGCTGCGGCGGGGTACCCTGCTCAACCTGGTCGTGCGTCGTCCATAGAAACTGGGACTAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCAAATGATGATATCAAGGAATTGTTTGCTGAAGTTGGTGACCTGAAACGGCATACAGTTCATTACGACAGGAGTGGCAGATCGAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGGCATGGCGGCTGTAAAGAGATACAACAATGACAAGGAAGAGGTGGGGCACCAAGAAGGCCAGGAGGAAGAGGGCAAGGCATTCGAAGGGATCGAGGACGGGGAAGAGGTCGTGGTGGAGGAGGTCGTGGCGAAAAGTTATCTGCAGATGATCTTGATGCTGATTTGGAGAAATATCATGCAGAGTCAATGCAATTGA 627 0.5167 MSAALDMTLDDIIKNNKKSGSGSSRGRTGPSGSGAGPARRLPNRAANRVAPYAAAKAPEATWQHDLFADQHVAAAGYPAQPGRASSIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADGMAAVKRYNNDKEEVGHQEGQEEEGKAFEGIEDGEEVVVEEVVAKSYLQMILMLIWRNIMQSQCN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0416 208 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 154 - -
Aed5g0416 208 Gene3D - 85 161 IPR012677 -
Aed5g0416 208 MobiDBLite consensus disorder prediction 14 30 - -
Aed5g0416 208 MobiDBLite consensus disorder prediction 1 47 - -
Aed5g0416 208 CDD RRM_THOC4 91 153 - -
Aed5g0416 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 154 IPR000504 GO:0003723
Aed5g0416 208 SMART rrm1_1 92 166 IPR000504 GO:0003723
Aed5g0416 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 187 IPR000504 GO:0003723
Aed5g0416 208 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 154 - -
Aed5g0416 208 SUPERFAMILY RNA-binding domain, RBD 85 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0416 Aed-Chr5 2941448 2949682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0416 90 139 Eukaryotic Initiation Factors Gene Family AT2G23350 46.000 4.11e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0416 K12881 - gmx:100775827 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0416 5 2941448 2949682 Aed5g0416 5 2941448 2949682 ECH
Aed1g1203 1 11621969 11627472 Aed5g0416 5 2941448 2949682 PCT