Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0408 ATGGCGAACACGCTCATTTCGTCTCCATCGTTCATCGGCACGCCGCTCCCCTCACTCCCTCGCCACCACCTCCCCCACCGCACCAGGCTTGTCGCCGTCAAAGTCCACGCCAGCCTCCATGAAATTCCCCCTATTCAATCCTTAAGCCACTCCATTGACTTCGCCGGAATCGTTACCAGAGCTGAAGGCCTTCTCTACACGCTCGCCGATGCTGCGGTTGCGCTGGACCCGGCGGCTTCCACCACCGATGCTGTCGTGCAGAAGAACGGTGGCTGGTTCGGCTTCATCTCCGAAGCCATGGAGTTCGTTCTCAAGGTGTTGAAGGATGGTCTTTCTGCCGTACATGTCCCTTATGCATATGGTTTTGCTATCATATTGCTCACTGTTATTGTTAAGGCTGCAACGCTTCCCTTGACAAAGCAACAGGTTGAATCTACACTAGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGAAAGATATGCTGGCAATCAGGAAAGAATACAACTTGAGACATCAAGGTTATATAGGCAGGCTGGGGTTAACCCATTGGCAGTCTCAACTTCTACTGCAATGTCATCAATTTGTATAGGTTGTTTACCAACTTTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGGATGGGCATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTTGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGGTTTGTAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATTGGGAGGTGCAAAGCCTATTGTGAATGAAAATGCTGGTGGGATTATTACTGCAGGACGTGCTAAAAGAACAGATTCACAGCCAGCAAGGGGTGGTGAAAGGTTTAAGCAGTTAAAAGAAGAGGAAAAGAAGAAAAACTTAACCAAGGCACTGCCTGTGGAAGAAGTTCAGCCACTGGCTTCTGATTCTGTTTCTGATGATGGCTCGGATACAGAAAGTGACAACAAGGGACAGGAAGTTGCAGAAGAAGCATATGCTTCTAAAGTTGGCGAAGAGGTTCAAACTCTTTCTAGGGAAAGAAGAAGCAAGCGTTCAAAGCGAAAACGCGCTGTATAA 1266 0.4589 MANTLISSPSFIGTPLPSLPRHHLPHRTRLVAVKVHASLHEIPPIQSLSHSIDFAGIVTRAEGLLYTLADAAVALDPAASTTDAVVQKNGGWFGFISEAMEFVLKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYRQAGVNPLAVSTSTAMSSICIGCLPTLATIPVWIGLYQALSNVANEDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQTDPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFVNNVLSTAQQVWLRKLGGAKPIVNENAGGIITAGRAKRTDSQPARGGERFKQLKEEEKKKNLTKALPVEEVQPLASDSVSDDGSDTESDNKGQEVAEEAYASKVGEEVQTLSRERRSKRSKRKRAV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0408 421 Pfam 60Kd inner membrane protein 120 310 IPR001708 GO:0016021|GO:0032977
Aed5g0408 421 PANTHER OXA1 225 415 IPR001708 GO:0016021|GO:0032977
Aed5g0408 421 PANTHER OXA1 1 224 IPR001708 GO:0016021|GO:0032977
Aed5g0408 421 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 225 415 - -
Aed5g0408 421 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 1 224 - -
Aed5g0408 421 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 120 309 IPR028055 -
Aed5g0408 421 PRINTS 60kDa inner membrane protein signature 276 299 IPR001708 GO:0016021|GO:0032977
Aed5g0408 421 PRINTS 60kDa inner membrane protein signature 193 216 IPR001708 GO:0016021|GO:0032977
Aed5g0408 421 MobiDBLite consensus disorder prediction 350 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0408 Aed-Chr5 2897548 2903576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0408 22 366 Chloroplast and Mitochondria Gene Families AT2G28800 65.449 3.68e-158 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0408 K03217 - gmx:100817173 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0408 5 2897548 2903576 Aed5g0408 5 2897548 2903576 ECH