Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0406 ATGTTAATCCTCTCTCTCTCTCTCTCTCCCTATACCTACTGCTACCACTACTACTCTATAAAAGGAGTAGTGTTTCACAAGCCATATAATCATCAACCCTTGAAAATGAACAAGTTTGATAGTATTGTGATGGGAGGGAGTGATGGTAATAGTGTTAATGCGGTGGCGGCGATGAGTAGTAGTAGTGGGTCTTCGCGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAATTTGTATAAGCAGGGAATAAAGACTCCGAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGCCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCAAGGCAGAGACAGAAGCAGAAGCAAGAAACCATTGCTTACTTCAATCGCTTTCTTCATACGCCCCCGACTCATCACCCTTTTTTCTCCACAACGCCAATTTCCCCAAATCCCATATGTGGCCCATATTGCATACCTCTGCAGGCACAGAGTGAAATTGGGTATTATCCTCCACATCAACATCCAAAAGTGCTTGTACCCGTAGGTTTTAGGAGGAGCCACTTTGAGAAAGTTGTGCCCACAGGCTCGCAAATGCAACAACAAAGGATCTCGGATTGCAGCAACTTGATGAGCTACAGTAACCAAGAAACGTTGGATCTTTTTCCTCTGCACCCAACTGGCATTTTGGAGGAAAAACAACAACAACAGACCAGGTGTGATACACCTTCTCCTGATAGTGATACTATCATTCAAGATCATCATCATCATCATGCAGCTTCCCACTAA 804 0.4403 MLILSLSLSPYTYCYHYYSIKGVVFHKPYNHQPLKMNKFDSIVMGGSDGNSVNAVAAMSSSSGSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRPYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPPTHHPFFSTTPISPNPICGPYCIPLQAQSEIGYYPPHQHPKVLVPVGFRRSHFEKVVPTGSQMQQQRISDCSNLMSYSNQETLDLFPLHPTGILEEKQQQQTRCDTPSPDSDTIIQDHHHHHAASH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0406 267 MobiDBLite consensus disorder prediction 238 267 - -
Aed5g0406 267 ProSiteProfiles 'Homeobox' domain profile. 60 125 IPR001356 GO:0003677
Aed5g0406 267 Gene3D - 66 133 - -
Aed5g0406 267 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 53 253 - -
Aed5g0406 267 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 53 253 IPR044555 GO:0003700|GO:0099402
Aed5g0406 267 MobiDBLite consensus disorder prediction 238 252 - -
Aed5g0406 267 SMART HOX_1 62 129 IPR001356 GO:0003677
Aed5g0406 267 SUPERFAMILY Homeodomain-like 60 131 IPR009057 -
Aed5g0406 267 Pfam Homeodomain 65 124 IPR001356 GO:0003677
Aed5g0406 267 MobiDBLite consensus disorder prediction 253 267 - -
Aed5g0406 267 CDD homeodomain 66 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0406 Aed-Chr5 2883522 2884735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0406 50 162 Wox Gene Family AT5G59340 66.372 1.28e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aed5g0406 Homeodomain 5.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0406 - - gmx:100817714 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0406 5 2883522 2884735 Aed5g0406 5 2883522 2884735 ECH