Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0403 ATGGAGGGCGAGGGCGAGGGCGAGAACGCGAACGCGAGCAAGGTGATCGAGTTGGTGAACGAGATAGCCAGCATCTCAGATTACAGGCCACCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGCTGAAGCTCCTGATCCCGATGTTCGAGGAGATTAGGGACATGAACAAAAACGCGGTTCCCGAGGACACTTCCAAAGCCGTGCTCTCCTTCAAGGAAGCTCTCGAATCCGCTAGGGAACTCCTTAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGAAATTATGAATAAATTCTATGAGGCAACAGCTCGGTTGGAACAGTCATTGGGTGGTATTTCCTATGATGAACTTGATATATCGGATGAAGTTAAAGAGCAGGTTGAGTTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCATGTTGTATGAGGATATGTTGTCCCTTTACAACAACAGCAGTGAGGCAGCTACAGATCCATCTGTTTTAAGTCAATTAGCTGAAAAATTGCAATTGATGGGAATAGCTGATCTTACTCAAGAATCACTTGCTTTGCATGAGATGGTGGCATCAAGTAGTGGGGATCCAGGGGCACGCATTGAGAAATTGTCAATGTTATTAAAGAAGATAAAGGATTACGTGCAAATAGAAAATCTAGTCAAGGATGATAATTTAGGAGGAAAAGGCATATTCTTAAAAGTCTATGGACTTGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCGATTTCCCTGGAGTTAATGAAGGACCCTGTCATTGTTTCGACAGGACAGACTTATGAGCGTACTTGTATTGAGAAGTGGTTGCAAGAAGGGCATGGGACCTGCCCCAAAACACAGCAGACTCTCACTAGCACTGTTCTCACGCCTAACTATGTATTACGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCTGCTGAGCAAAGTAAGATTGGAAGTCTTCTCCAAAAACTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCGAAGCGCAATGCAGATAATCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTGGGTCTCCTGTCTGTTCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCACTCCTGAATCTTTCCATATATGAGAATAACAAAGCAAGCATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAACGCAGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGATCTTTAGGAGCCATACCACCGCTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGAAAGGCAGTGAGGGCTGGCGTTATTCCCACACTGATGCGACTACTTACTGAACCTAGTGGGGGAATGGTGGATGAAGCATTAGCTATTTTGGCAATATTATCTAGCCATCCTGATGGGAAGGCTACCATTAGAGCCTCAGAGGCAGTGCCGGTTTTGGTAGAGTTTATTGGGAATGGCTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTGGTTCATCTCTGTTCTGGAGATCAACAATATCTAGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAATTGGCTCAAAATGGTACAGACAGAGGAAAAAGAAAGGCTGGACAATTGCTAGAGCGTATGAGCAGGTTAGTTGAGCAACAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGATACCCAACAACCACCTTTGATTACTAACCCCGATGATTCCTAA 2010 0.4642 MEGEGEGENANASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMNKNAVPEDTSKAVLSFKEALESARELLRFGSEGSKLYLVLERDEIMNKFYEATARLEQSLGGISYDELDISDEVKEQVELVLAQFRRAKGRVDEPDVMLYEDMLSLYNNSSEAATDPSVLSQLAEKLQLMGIADLTQESLALHEMVASSSGDPGARIEKLSMLLKKIKDYVQIENLVKDDNLGGKGIFLKVYGLGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERTCIEKWLQEGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSTSQPSKSASAYSPAEQSKIGSLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKASIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILSSHPDGKATIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAGQLLERMSRLVEQQQQEVPTQTETQAQNEDTQQPPLITNPDDS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0403 669 MobiDBLite consensus disorder prediction 334 353 - -
Aed5g0403 669 Pfam Armadillo/beta-catenin-like repeat 472 510 IPR000225 GO:0005515
Aed5g0403 669 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Aed5g0403 669 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 650 - -
Aed5g0403 669 PANTHER U BOX DOMAIN-CONTAINING 9 650 - -
Aed5g0403 669 CDD RING-Ubox_PUB 266 308 IPR045210 -
Aed5g0403 669 MobiDBLite consensus disorder prediction 337 353 - -
Aed5g0403 669 MobiDBLite consensus disorder prediction 636 669 - -
Aed5g0403 669 SUPERFAMILY ARM repeat 360 638 IPR016024 -
Aed5g0403 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Aed5g0403 669 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Aed5g0403 669 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Aed5g0403 669 SUPERFAMILY RING/U-box 252 338 - -
Aed5g0403 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 335 IPR013083 -
Aed5g0403 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Aed5g0403 669 Coils Coil 623 643 - -
Aed5g0403 669 Pfam Neurochondrin 523 640 IPR008709 -
Aed5g0403 669 Gene3D - 10 121 IPR036537 GO:0007166
Aed5g0403 669 Gene3D - 346 659 IPR011989 -
Aed5g0403 669 SMART arm_5 389 429 IPR000225 GO:0005515
Aed5g0403 669 SMART arm_5 471 511 IPR000225 GO:0005515
Aed5g0403 669 SMART arm_5 512 552 IPR000225 GO:0005515
Aed5g0403 669 SMART arm_5 595 635 IPR000225 GO:0005515
Aed5g0403 669 SMART arm_5 430 470 IPR000225 GO:0005515
Aed5g0403 669 SMART arm_5 553 593 IPR000225 GO:0005515
Aed5g0403 669 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0403 Aed-Chr5 2865069 2870110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0403 6 653 U-box Gene Family AT3G46510 70.507 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0403 - - gmx:100812160 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0403 5 2865069 2870110 Aed5g0403 5 2865069 2870110 ECH