Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0401 ATGGCAGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAAGCCGGATTTGCTGGGGATGATGCTCCAAGGGCTGTGTTCCCCAGCATTGTTGGTCGACCCCGTCACACGGGAGTGATGGTAGGCATGGGCCAAAAAGATGCATATGTTGGGGATGAAGCTCAGTCCAAGAGAGGTATATTAACCCTCAAATATCCCATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTTGCTCCCGAGGAGTACCCAGTTCTGCTTACTGAAGCACCTCTCAACCCAAAGGCTAATCGTGAGAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCCATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTGGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACCGTCCCCATTTATGAAGGCTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCGCGATCTCACTGATGCTTTGATGAAAATCCTTACAGAACGTGGTTATTCCTTCACCACCACAGCTGAACATGAAATTGTAAGGGATGTGAAGGAAAAGCTGGCTTATATTGCCCTTGATTATGAGCAAGAGCTTGAAACATCAAAAACTAGCTCCTCTGTTGAGAAGAGCTATGAGTTGCCCGATGGGCAGGTGATCACCATTGGCTCTGAGCGTTTCCGATGCCCTGAAGTACTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGCATTCATGAGACCACTTACAATTCAATAATGAAGTGTGATGTCGATATTAGGAAGGACTTGTATGGAAACATCGTTCTCAGTGGTGGTTCTACCATGTTCACTGGTATTGCTGACAGAATGAGCAAGGAAATCTCAGCTTTGGCCCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTACGATGAAGCCGGTCCTTCAATTGTACACAGGAAATGCTTCTAA 1125 0.472 MADIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEYPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEHEIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0401 374 Gene3D - 7 368 - -
Aed5g0401 374 CDD NBD_sugar-kinase_HSP70_actin 7 180 - -
Aed5g0401 374 PANTHER ACTIN-97 2 373 - -
Aed5g0401 374 SMART actin_3 4 374 IPR004000 -
Aed5g0401 374 PRINTS Actin signature 235 251 IPR004000 -
Aed5g0401 374 PRINTS Actin signature 25 34 IPR004000 -
Aed5g0401 374 PRINTS Actin signature 60 82 IPR004000 -
Aed5g0401 374 PRINTS Actin signature 48 59 IPR004000 -
Aed5g0401 374 PRINTS Actin signature 114 127 IPR004000 -
Aed5g0401 374 PRINTS Actin signature 139 158 IPR004000 -
Aed5g0401 374 ProSitePatterns Actins signature 1. 52 62 IPR004001 -
Aed5g0401 374 ProSitePatterns Actins and actin-related proteins signature. 103 115 IPR020902 -
Aed5g0401 374 Pfam Actin 3 374 IPR004000 -
Aed5g0401 374 SUPERFAMILY Actin-like ATPase domain 146 374 IPR043129 -
Aed5g0401 374 Gene3D Actin; Chain A, domain 4 179 270 - -
Aed5g0401 374 SUPERFAMILY Actin-like ATPase domain 3 152 IPR043129 -
Aed5g0401 374 ProSitePatterns Actins signature 2. 355 363 IPR004001 -
Aed5g0401 374 PANTHER ACTIN 2 373 IPR004000 -
Aed5g0401 374 Gene3D - 137 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0401 Aed-Chr5 2848200 2851911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0401 3 374 Cytoskeleton Gene Families AT3G12110 96.237 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0401 K10355 - gmx:100811630 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0401 5 2848200 2851911 Aed5g0401 5 2848200 2851911 ECH
Aed1g1216 1 11715169 11719331 Aed5g0401 5 2848200 2851911 ECH
Aed1g1216 1 11715169 11719331 Aed5g0401 5 2848200 2851911 PCT