Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0400 ATGGCCATGGATGAATATGAGTGTGATGAGAAGGTCTACGTGGCAGTTGGGAAGTCCCTCAAGAAAGCCGCCACTTTGCTTCAATGGTGTTTCACTCATTTCAGCAAATCACAGATTTGCTTACTTCATGTTCGCCAACCTTCTACTATGATCCCCACACTATTGGGGAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTGGTGTTGGCTTATAGAATTGAGGAAAGAGAAGAGACTAGGAGGCTTTTGGAGAAGTACTTGAGCCTTTGCCGCGCTGCTAAGGTTAAGGCAAACAGTGTCATTGGTGAAGCTGAACAAGTCCAGAAAGGGATTGTTGACTTGCTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCCACACCAGAAAATTGCATGAAAATCAAAAGAAATTCCAGCAAAGCAAATTATGCTGCTAAAAATGCTCCTCCATTTTGTGAAATATGGTTTGTCTACAACGATAAGCACATTTGGACAAGAAAAGCTTCTGAAACTCCTCGTTCTGAGACTACAACTGCAGAGAGCTTGAGTTGTAGATCATTTCATGATGGTACAATTGAATTATCCCATTCAGAATGTCTTCAATTAAATTCTACAAGGAACACAAGAAGTATGGTTCAGAGTGAAATCATTGAAGTAGAAGCTATTTTTTCATCCAAATCATCCAGTTGTAATAGTCATTGTTCTCCCCAACATTCAGAGTTTGAGGAAGAAACAATTGATAGTCAACTTATTGAAGCCAAAAGGTTGGAAGTCAAAGCCATCGAGGCCATTATAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGCTACAATACAGGAGCAACAGATGTTCTTGGAAGAGAAAGAAGAAATTGCTAGTGAGATGGAAAACACTGCGAGAAGTATTTCCCATCTAGTCAGTTGTGCAAATGAAACCGACCATAAACGAGATGAAGCTGCAAATGAACTGTCACTAATCCAAGCATCCATCTCAAACCTGCAGCATGAAAAGCAGCAAATCAGGCGACAGAAAACGGAAGCCCTACACTGGCTTGAACGGTGGAAAAGTTGCGGACAAGTTGGAGCTGATCACTGCAATGGACTACTCATTGGGTTTGCTGAAGAGTTCCCTGAGCTTGCTGAATTTTCATTATCAGATCTTCAACATGCCACATGCAATTTTTCTGAGTGTTTCAAATTTATGGAGGGTGGATATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACAGTTGCTATAAGGAGGCTCCATCCACACAACATGCAAGGATCAACAGATCTCCAACACCCTCATCTGGTGACTTTGCTTGGTGTTTGTCCTGAAGCCTGGTCATTTGTATACGAGTACTTGCCCAGTGGAAGTCTCCAAGACTATCTATTCCGGAAAAGCAGTCATCTGCCCTTGACATGGAACATCCGAGCACGATGGATTGCCGAAATTGCTACAGCTATCTGCTTCTTACATTCTTCAAAACCTGAAACTATTATCCACGGTGGTCTGACTCTTGAAACTGTTCTTCTTGACTCTGCACTTAGTTGCAAGATATGTGAATTTGGCTTCAGCAGGCTGGTGAAAGAGGACTCAATTTATCTTCCTAGCTTCCTCTTCAGCACTGAGCCAAAAGGTTCTTTTACATATACAGATCCTGAATTTCACAGAACCGGAGTACTAACACCTAAGTCTGACATATACTCTTTTGGACTCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCTGGTGAAGTGCGCAGAGCGGTTTCGTGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGCATTCAATTGTGGCAACACGATTGGCTGAACTGGGATTGCAATGTTGCCAAGTGAACAGTAGAGGCAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGGAGCAGTTGCATGTTTTAGAAGAGCGCCCTGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCAGATGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGCTGGAAAATGGGCACGAAACTTCTCCTATGACTAATTTGAAATTGACTCACCTGCATCTCACTCCCAATCATGCACTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 2193 0.4245 MAMDEYECDEKVYVAVGKSLKKAATLLQWCFTHFSKSQICLLHVRQPSTMIPTLLGKLPASQASPEVVLAYRIEEREETRRLLEKYLSLCRAAKVKANSVIGEAEQVQKGIVDLLTVHNIRKLVIGATPENCMKIKRNSSKANYAAKNAPPFCEIWFVYNDKHIWTRKASETPRSETTTAESLSCRSFHDGTIELSHSECLQLNSTRNTRSMVQSEIIEVEAIFSSKSSSCNSHCSPQHSEFEEETIDSQLIEAKRLEVKAIEAIIKLRKEAEDALRATIQEQQMFLEEKEEIASEMENTARSISHLVSCANETDHKRDEAANELSLIQASISNLQHEKQQIRRQKTEALHWLERWKSCGQVGADHCNGLLIGFAEEFPELAEFSLSDLQHATCNFSECFKFMEGGYGSIYKGEMLGRTVAIRRLHPHNMQGSTDLQHPHLVTLLGVCPEAWSFVYEYLPSGSLQDYLFRKSSHLPLTWNIRARWIAEIATAICFLHSSKPETIIHGGLTLETVLLDSALSCKICEFGFSRLVKEDSIYLPSFLFSTEPKGSFTYTDPEFHRTGVLTPKSDIYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWHSIVATRLAELGLQCCQVNSRGRPELTPSLVRELEQLHVLEERPVPSFFLCPIFQEIMHDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLTHLHLTPNHALRLAIQGWLCKS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0400 730 SUPERFAMILY Protein kinase-like (PK-like) 380 643 IPR011009 -
Aed5g0400 730 Coils Coil 262 282 - -
Aed5g0400 730 Coils Coil 318 345 - -
Aed5g0400 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 730 IPR013083 -
Aed5g0400 730 PANTHER OS02G0152300 PROTEIN 8 237 - -
Aed5g0400 730 PANTHER OS02G0152300 PROTEIN 260 729 - -
Aed5g0400 730 ProSiteProfiles U-box domain profile. 659 730 IPR003613 GO:0004842|GO:0016567
Aed5g0400 730 Gene3D Phosphorylase Kinase; domain 1 374 458 - -
Aed5g0400 730 SMART Ubox_2 663 726 IPR003613 GO:0004842|GO:0016567
Aed5g0400 730 CDD STK_N 11 158 - -
Aed5g0400 730 Pfam Protein tyrosine and serine/threonine kinase 434 641 IPR001245 GO:0004672|GO:0006468
Aed5g0400 730 SUPERFAMILY RING/U-box 657 729 - -
Aed5g0400 730 Gene3D Transferase(Phosphotransferase) domain 1 459 659 - -
Aed5g0400 730 ProSiteProfiles Protein kinase domain profile. 396 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0400 730 Gene3D HUPs 7 150 IPR014729 -
Aed5g0400 730 Pfam U-box domain 660 729 IPR003613 GO:0004842|GO:0016567
Aed5g0400 730 PANTHER OS10G0100500 PROTEIN 8 237 - -
Aed5g0400 730 PANTHER OS10G0100500 PROTEIN 260 729 - -
Aed5g0400 730 CDD RING-Ubox_WDSUB1_like 664 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0400 Aed-Chr5 2841327 2847399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0400 9 727 U-box Gene Family AT2G45910 33.955 6.77e-142 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed5g0400 PK_Tyr_Ser-Thr 3.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0400 - - gmx:100799032 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0400 5 2841327 2847399 Aed5g0400 5 2841327 2847399 ECH
Aed1g1217 1 11719513 11724616 Aed5g0400 5 2841327 2847399 PCT