Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0396 ATGGGAGTTTGTTTGAGCACCAAAATTAAAGCTGGGGTAAATTCAAAGCATGTGAGTGCCGATGCAAAAGATCTCAGCAGTCCAAGTAGTAATAAAACTACAAAAGATCTCACTCTCACCTCAGAAGTTTTGGTGCCTCAGACTCCTGAGAGTGAGATCTTGCAGCCATCCAATCTGAAGAACTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGCAAAGACAGTGTGTTGGGAGGAGAATTAGATGGTTTTGGATCAGTTTTCAAGGGCTGGATTGATGATCACTCTCTGGCTGCTGCCAAACCTGGCAAAGGCGTTGTTGTTGCTGTGAAAAGACTTAGTCTTGATAGCTTCCAAGGCCAAAAGGATTGGTTGGATGAAGTAAACTATCTAGGCCAGCTATCTCATCCTCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATAAAGACCGGCTTCTGGTCTATGAATTTATGCCACGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGGTCATACTTTCAACCTCTTTCTTGGGGTCTCCGTTTGAAAGTTGCTCTAGGAGCCGCCAAAGGGCTTGCATTTCTCCACAGTGCTGAAACAAAAGTGATATACAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTGCTGATTTGGGGCTGGCAAAGGACGGGGCAACACGTGACAACAAAAGTCATGTCTCCACCACCAGAGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTTGCCACAGGTATTACATAA 804 0.4316 MGVCLSTKIKAGVNSKHVSADAKDLSSPSSNKTTKDLTLTSEVLVPQTPESEILQPSNLKNFSLTELTAATRNFRKDSVLGGELDGFGSVFKGWIDDHSLAAAKPGKGVVVAVKRLSLDSFQGQKDWLDEVNYLGQLSHPHLVKLIGYCFEDKDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYKDFKTSNVLLDSNYNAKLADLGLAKDGATRDNKSHVSTTRVMGTYGYAAPEYLATGIT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0396 267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Aed5g0396 267 Pfam Protein tyrosine and serine/threonine kinase 87 264 IPR001245 GO:0004672|GO:0006468
Aed5g0396 267 PANTHER OS01G0588500 PROTEIN-RELATED 43 265 - -
Aed5g0396 267 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Aed5g0396 267 PANTHER KINASE 1B 43 265 - -
Aed5g0396 267 ProSiteProfiles Protein kinase domain profile. 76 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0396 267 SUPERFAMILY Protein kinase-like (PK-like) 50 265 IPR011009 -
Aed5g0396 267 Gene3D Transferase(Phosphotransferase) domain 1 162 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0396 Aed-Chr5 2821873 2824477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0396 60 265 Glycoside Hydrolase AT3G07070 50.242 7.28e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed5g0396 PK_Tyr_Ser-Thr 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0396 - - gmx:100809679 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0396 5 2821873 2824477 Aed5g0396 5 2821873 2824477 ECH