Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0394 ATGATAGAAAAGTCTTTGGAAAAATTCCAAAAGTTAGCCCTGCAGTGCAAGCTGTCACTAGCGCCTCCCCTGCTCCATAAGTACCTCCACCCTCTCCACACTGACCAATCGCCTCTCATCCTCTTTAATTTCAACCTCCGAGAGAAGAAGAAGAAAATGGCCATGGCCAACTGCAATGTACTCTGCATTGCGTTCATAGTTTTCTCTGTAGCGTGGGTAGCAGTAGTAGTCGAAGCACGCATTCCCGGGGTTTACTCCGGTGGTGCATGGCAGAGTGCTCACGCCACCTTCTACGGAGGTTCCGACGCCTCCGGCACCATGGGTGGAGCGTGTGGGTATGGGAACCTGTACAGCCAGGGTTACGGCGTGAACACGGCGGCATTGAGCACGGCGCTGTTCAACAATGGGCTTAGCTGCGGTGCTTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGTCACTCCGGCAGTCCTTCCATCCTCATCACCGCCACTAACTTTTGCCCTCCCAACTTTGCCCTTCCAAATGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATCGTCCCCGTTGCCTTTCGCCGGGTGCCATGCAGAAAGCAGGGAGGGATAAGGTTCACGATAAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCGGGTGCGGGGGATATCGTGCGCACGTACGTGAAGGGCTCCCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAATGCGGTTTTGGTGGGGCAGGCCGTGTCCTTCCGCGTCACGAGCAGCGACCGCCGCACCTCGACCTCGTGGAACATCGCACCACCCAATTGGCAATTCGGTCAAACTTTCACCGGCAAAAATTTCCGGCTCTGA 951 0.5563 MIEKSLEKFQKLALQCKLSLAPPLLHKYLHPLHTDQSPLILFNFNLREKKKKMAMANCNVLCIAFIVFSVAWVAVVVEARIPGVYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQAVSFRVTSSDRRTSTSWNIAPPNWQFGQTFTGKNFRL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0394 316 Gene3D - 222 314 IPR036749 -
Aed5g0394 316 PANTHER EXPANSIN 59 315 - -
Aed5g0394 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 108 222 IPR007112 -
Aed5g0394 316 Pfam Lytic transglycolase 125 211 IPR009009 -
Aed5g0394 316 SMART dpbb_1 125 212 IPR007112 -
Aed5g0394 316 Gene3D - 75 218 IPR036908 -
Aed5g0394 316 PRINTS Expansin/Lol pI family signature 297 311 IPR007118 GO:0005576
Aed5g0394 316 PRINTS Expansin/Lol pI family signature 205 221 IPR007118 GO:0005576
Aed5g0394 316 PRINTS Expansin/Lol pI family signature 129 147 IPR007118 GO:0005576
Aed5g0394 316 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Aed5g0394 316 PRINTS Expansin/Lol pI family signature 89 104 IPR007118 GO:0005576
Aed5g0394 316 PRINTS Expansin/Lol pI family signature 107 125 IPR007118 GO:0005576
Aed5g0394 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 232 311 IPR007117 -
Aed5g0394 316 Pfam Expansin C-terminal domain 223 300 IPR007117 -
Aed5g0394 316 SUPERFAMILY PHL pollen allergen 219 311 IPR036749 -
Aed5g0394 316 PANTHER EXPANSIN-A15 59 315 IPR002963 GO:0009664
Aed5g0394 316 SUPERFAMILY Barwin-like endoglucanases 65 240 IPR036908 -
Aed5g0394 316 PRINTS Expansin signature 180 197 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 297 313 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 120 134 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 221 233 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 161 171 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 197 210 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 268 289 IPR002963 GO:0009664
Aed5g0394 316 PRINTS Expansin signature 147 158 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0394 Aed-Chr5 2809758 2812012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0394 60 316 Expansin Gene Family AT2G39700 83.658 4.28e-164 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0394 - - gmx:100809139 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0394 5 2809758 2812012 Aed5g0394 5 2809758 2812012 ECH
Aed5g0394 5 2809758 2812012 Aed3g2072 3 24658300 24659975 ECH
Aed1g1226 1 11764599 11766030 Aed5g0394 5 2809758 2812012 ECH
Aed9g1851 9 22122796 22125959 Aed5g0394 5 2809758 2812012 ECH
Aed1g1226 1 11764599 11766030 Aed5g0394 5 2809758 2812012 PCT