Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0388 ATGGAGTCAAACTTTCCCGGTGCTGAAGACCAGGACATACCGTATCTCTCATATTCGCTTGATTTTCCAGCCATGGATCCTTCACCTGAAGACAACGACTTCTCAGAAACTGCAAAGTTCATCAGCCAGATCCTCATGGAAGAAAACGTTGAACAGAGCCCATTCTACGACTCTCTCACCTTGCAAGTTACCGAAAAATCCTTCTACGATGCTCTCGCCGGTAACCTACCTCTTTCCCCCAATCAACACCCTCTTCTTCTTCTCAGTCCCGAGGGTGCCACCTCCAGCAGTAGCAACAACAGCAGTGACAATTTTTCAGATGAAAATTCTCGTGAGTTGAAGATTCCCTCTCCAGATTCTCTTTCTGTTTCTGCTTTTCACTTTAACCCCCACGCACTTTCTCAGTCACTGCCTTCGGTTACTGTTACTGATGGAGTCTCAGATTTGGATTCCTCTATTGCCAAACTCTTGGCACAGAATATCTTCAATGATGTTGATTCTGTTTCCCAGTTTAGGAGAGGCTTGGAGGAAGCTAGCAAATTTCTTCCTCCGGGGCCTAACCTTCTAACTGGTCTACATTCAAAGGCAGAACAACCAATCAATACTTTTGGAGAGAATTCCTATGGGTTGTTGAAGAGTAGGAAGAATCACCACGATCGCCAAGAGATAGACACTGGAGAAGAAGAAGAAGGAGAAGAAGGAGGGAGAAGTAACAAGCAATCAGCACTTTCCCTTGTTGATGAGAGTGACCTTTCAGATGCTTTTGATCGGGTGTTGCTTTATGAGGGAAGCCTGTGTGGCGAACAACACACTTGTTTGCCGACTGAAGCAGTGAACATCAAGGGTCTTTCAAAGAAACAAGGGAGGAAGAAGGAAATAGTAGATTTGAGGAATCTTCTGCTGATGTGTGCACAATCTGTGTATGTCAATGACAACAGGACTGCCTATGAATTGCTAAAGCAGATTAGGCACCACTCTTCCCCCTCTGGGGATGCATCACAGAGGTTGGCTTATTACTTTGCCAATGGCCTCGAGGCGCGGTTGGTGGGGAATGGTACAGGTTCACAAGGAATGTATTCTTATCTGAGCTCTAAGAAGATCACTGCTGCTGAATTTCTCAAGGCATACCATGTTTTCCTTTCTTCCTGCCCTTTCAAGAAGTTTACATATTTCTTTGGAAATAAAATGATTATGAAAGCAGCTGCAAAGGCGGAAACTGTCCATGTTATTGACTTTGGCATCCTATATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTGTCAACTAGGGAGGGCGGACCTCCCAAGCTGAGGATCACAGGGATTGAGTTTCCCCAACCTGGCTTTCGCCCCACCGAAAAAATTGATGAGACTGGTCGCCGTCTGGCTAACTATTGCAAGCGTTACAATGTTCCCTTTGAGTACAATGCCATAGTGTCAAGGAACTGGGAAACCATTCAGGTTGAAGCCCTTAAAATTGAGAGGAACGAGTTAGTTGCTGTCAACTGTCACTTGAGGTTTGAGAATTTGCTGGATGAGTCTATTGAAGTGAACAGTCCTAGAAATGAAGTCCTGCATTTGATCAGGAAGATAAATCCAGATATTTTTACTCACTCCATCACTAATGGATCATATAATGCCCCGTTCTTTGCCACGCGGTTTAGGGAGGCTCTGTTTCATTATTCTGCTACTTATGATATGATTGACAGTGTCATATCTCGTGATAATGAATGGAGGTTGATGATTGAGAGAGAGCTTTTGGGCCGGGAGATTACGAATGTTATAGCATGTGAAGGCTCTGAGAGGATTGAAAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACGAGAGCCGGTTTCAAGCAGCTCCCACTGAATAAGGAATTAATGAACAAATTCAGGAACAAGTTAAAGGAATGGTACCACAGAGATTTTGTTATAGATGAAGATAACAACTGGCTGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCTACTTGTTGGGTGCCAGCATAA 2022 0.4421 MESNFPGAEDQDIPYLSYSLDFPAMDPSPEDNDFSETAKFISQILMEENVEQSPFYDSLTLQVTEKSFYDALAGNLPLSPNQHPLLLLSPEGATSSSSNNSSDNFSDENSRELKIPSPDSLSVSAFHFNPHALSQSLPSVTVTDGVSDLDSSIAKLLAQNIFNDVDSVSQFRRGLEEASKFLPPGPNLLTGLHSKAEQPINTFGENSYGLLKSRKNHHDRQEIDTGEEEEGEEGGRSNKQSALSLVDESDLSDAFDRVLLYEGSLCGEQHTCLPTEAVNIKGLSKKQGRKKEIVDLRNLLLMCAQSVYVNDNRTAYELLKQIRHHSSPSGDASQRLAYYFANGLEARLVGNGTGSQGMYSYLSSKKITAAEFLKAYHVFLSSCPFKKFTYFFGNKMIMKAAAKAETVHVIDFGILYGFQWPILIKFLSTREGGPPKLRITGIEFPQPGFRPTEKIDETGRRLANYCKRYNVPFEYNAIVSRNWETIQVEALKIERNELVAVNCHLRFENLLDESIEVNSPRNEVLHLIRKINPDIFTHSITNGSYNAPFFATRFREALFHYSATYDMIDSVISRDNEWRLMIERELLGREITNVIACEGSERIERPETYKQWQVRNTRAGFKQLPLNKELMNKFRNKLKEWYHRDFVIDEDNNWLLQGWKGRILYASTCWVPA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0388 673 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 21 672 - -
Aed5g0388 673 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 672 IPR005202 -
Aed5g0388 673 MobiDBLite consensus disorder prediction 214 244 - -
Aed5g0388 673 Pfam GRAS domain family 296 670 IPR005202 -
Aed5g0388 673 MobiDBLite consensus disorder prediction 88 106 - -
Aed5g0388 673 MobiDBLite consensus disorder prediction 83 116 - -
Aed5g0388 673 ProSiteProfiles GRAS family profile. 287 671 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0388 Aed-Chr5 2774707 2776728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0388 39 673 GRAS Transcription Factor Family AT1G07530 48.276 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed5g0388 GRAS 7.3e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0388 - - gmx:100795855 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0388 5 2774707 2776728 Aed5g0388 5 2774707 2776728 ECH
Aed1g1232 1 11800491 11803237 Aed5g0388 5 2774707 2776728 PCT
Aed5g0388 5 2774707 2776728 Aed1g1231 1 11795280 11797022 PCT