Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0386 ATGCTCGCCACGGATTCCCTTTTGGAAAATTTTCCTGGTTCCGTGAACGGATTCATATTTGAAAACGGTCCTATCTCGGTGTTTTCGAATCAGAATCCGGCAAGTGGGTTCAAAGTGGATGATTCATGTTCCCCTTCTTCTGGGACAAGTTCAAATGGAGAACATGCAGAGAGTACCAAACATTCCAATCCCATTCTCAGATACATAAGTGATATTCTCATGGAAGAAGAGGGTGATTTGGAGCGAAAACCCTGCATGTTGCAGGATTGTTTGAGACTCCAAGCTGCTGAGAAATCATTCTATGATGCGTTGCTTCATAGTTACCCTTCATCACCTCGTCAATTTAATGATAACCCTGACCCAGATGATAATTTTGGTGGAACTACTAGTTCTGAGAGTTTTAGCAGTTATACCACTGATAATTCATGTGAGTCTGATTGGTTTAACGGTGCAAGTGACTTTGAGTCTTCTTTCCTACCAAGATCTCTGATTGATTCTCCAGAACATGCCTATGTGGCTCCTGATATGTTTAGAGAGACACAAGCTGGGGGTCATTTTTCAAATGGGGCCTGGAATTTGATTCACTCGCAGAACAATGGTGTGATTCATGGTTCTGTAGCAGCCACAGGATTGAGGGAGAAGAGGAGCTATCTAATGAATGATAATATCTCACAGGAGAGAAGCAACAAGCTTTCAGCTGTCTACTCCGATGATACGGAGCCATCTAGCATGTTTGATGAGGTGCTGCTTTGTAAGGATGGTAAGAGTCCGACCATTTTTCATGCTGGTTCAACATCACAGATTGCTGACTCGGGACGATCTAATGGGAAGACAACACGTTCGAAGAAAGGCTCCAACAAAGGTTCCAACAAGGGGACAAGTGCAAGTGCAACGGTGGATTTATGGACTTTGTTAACCCAATGTGCACAGGCTGTGGCTAGCTTTGATCAAAGGACTGCAAATGAAACACTCAAGCAGATTAGGCAGCACTCTACGCCTTTTGGCGATGGACTTCAGCGTTTGGCCCATTACTTTGCTTATGGACTAGAGACACGGTTAGCTGCTGGGACACCAAAGTTCATTTCCTTTCAGTCAGCATCTGCTGCAGATATGTTGAAAGCTTACAGAGTGTATATCACAGCAGCACCATTTCTCAGGATGTCAAATTTCTTGGCTAACCGCACTATTCTGAAGCTAGCTCAAAATGAAACCTGTCTTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGCCTCATCCAAAGGCTTTCAGAGAGGCCAGGCGGGCCTCCAAAGCTTCGTATGACAGGAATTGATCTTCCTCAGCCGGGATTTAGGCCTGCTGAAAGGGTTGAGGAGACGGGGCGTTGGCTGGAGAAGTACTGCAAGAGGTTTGGTGTCCCATTTGAGTACAATTGCCATGCTCAGAAATGGGAAACTATAAGACTTGAGGACCTCAAAATTGATAGGAGTGAAGTAACTGTGGTTAACTGTTTGTACAGATTGAAGAACCTATCTGATGAAACTGTGACTGCAAACTGTCCAAGAGATGCTTTGCTGAGGTTGATCAGGAGGATCAATCCAAGCATCTTCATGCACGGGGTTGTCAATGGAACATACAATGCACCATTTTTCATGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCATCATTGTTTGACATGTTTGAAGCTAATGTGCCTCGCGAAGATCCATCTAGGATTATGATTGAGAAAGGGTCGTTTGGAAGGGATGCAATCAATGTGATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCAGAAACCTACAAGCAATGGCAAGTTAGGAACCAGAGAGCAGGGTTCAAGCAACTTCCATTGGCCCCAGAGCTCGTGAATAGAGTGAAGGGAATGGTGAAGAAGGAACATCATAAAGATTTTGTAGTTGATGAAGATGGCAAGTGGGTTTTGCAAGGATGGAAAGGCCGAATTCTTTTTGCTGTTTCCTCTTGGGTTCTTGCATGA 2016 0.4459 MLATDSLLENFPGSVNGFIFENGPISVFSNQNPASGFKVDDSCSPSSGTSSNGEHAESTKHSNPILRYISDILMEEEGDLERKPCMLQDCLRLQAAEKSFYDALLHSYPSSPRQFNDNPDPDDNFGGTTSSESFSSYTTDNSCESDWFNGASDFESSFLPRSLIDSPEHAYVAPDMFRETQAGGHFSNGAWNLIHSQNNGVIHGSVAATGLREKRSYLMNDNISQERSNKLSAVYSDDTEPSSMFDEVLLCKDGKSPTIFHAGSTSQIADSGRSNGKTTRSKKGSNKGSNKGTSASATVDLWTLLTQCAQAVASFDQRTANETLKQIRQHSTPFGDGLQRLAHYFAYGLETRLAAGTPKFISFQSASAADMLKAYRVYITAAPFLRMSNFLANRTILKLAQNETCLHIIDFGISYGFQWPCLIQRLSERPGGPPKLRMTGIDLPQPGFRPAERVEETGRWLEKYCKRFGVPFEYNCHAQKWETIRLEDLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPSIFMHGVVNGTYNAPFFMTRFREALFHFSSLFDMFEANVPREDPSRIMIEKGSFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQLPLAPELVNRVKGMVKKEHHKDFVVDEDGKWVLQGWKGRILFAVSSWVLA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0386 671 ProSiteProfiles GRAS family profile. 292 669 IPR005202 -
Aed5g0386 671 MobiDBLite consensus disorder prediction 262 294 - -
Aed5g0386 671 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 670 IPR005202 -
Aed5g0386 671 MobiDBLite consensus disorder prediction 38 61 - -
Aed5g0386 671 Pfam GRAS domain family 303 668 IPR005202 -
Aed5g0386 671 MobiDBLite consensus disorder prediction 111 137 - -
Aed5g0386 671 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 27 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0386 Aed-Chr5 2755300 2757315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0386 11 669 GRAS Transcription Factor Family AT2G29060 44.345 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed5g0386 GRAS 6.5e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0386 - - gmx:100815586 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0386 5 2755300 2757315 Aed5g0386 5 2755300 2757315 ECH
Aed1g1233 1 11807423 11809216 Aed5g0386 5 2755300 2757315 ECH
Aed5g0386 5 2755300 2757315 Aed1g1232 1 11800491 11803237 PCT